SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5663

Length: 434 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene5663
CGTCGTGACCTTGGCTGTCACTCATCAGTTTAGGGGTACCCCTTTTGGCTGTTCCTCAACAGAGCGATCAGACGACGAATTCCCTTTACATCGCAGAGATATGGAAGACAGGACTGAGATTAAATAAGCGACCCGCAGATGGACTGGTGGGGAAGGAGGCTGTGGAGAAATGTATAAAGATTGTTATGGAAAGCGAAATGGGTGTTGAGCTGAGGGAGAACGCTTCACGGTGGAAGAAATTATCGAGGGAGGCAATGGGAGAAAGCGGATCTTCCAATAAAAATATTCAAGAATTTGTTGAGGATATTGCTCGCAGAGCATCCTCATTGCCATTATCCGGTTAATGCTCTCATGGATTTCTGAATAATACTATGCTGCAGTAGTCCCTGCCGTGCCTTTGAAGAAAGGTTCATATGGACATTGTCAATTGCCGA

Ace file of the UniGene sp_v2.0_unigene5663

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum]	-	-	2.0e-22	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	protein	-	-	1.02295e-43	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	1.02295e-43	75%

Source	KEGGs	Term	e value	Identity
Blast2go	Fructose and mannose metabolism	00051	1.02295e-43	75%
Blast2go	N-Glycan biosynthesis	00510	1.02295e-43	75%
Blast2go	Mucin type O-Glycan biosynthesis	00512	1.02295e-43	75%
Blast2go	Various types of N-glycan biosynthesis	00513	1.02295e-43	75%
Blast2go	Other types of O-glycan biosynthesis	00514	1.02295e-43	75%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	1.02295e-43	75%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	1.02295e-43	75%
Blast2go	Lipopolysaccharide biosynthesis	00540	1.02295e-43	75%
Blast2go	Peptidoglycan biosynthesis	00550	1.02295e-43	75%
Blast2go	Glycerolipid metabolism	00561	1.02295e-43	75%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	1.02295e-43	75%
Blast2go	Sphingolipid metabolism	00600	1.02295e-43	75%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	1.02295e-43	75%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	1.02295e-43	75%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	1.02295e-43	75%
Blast2go	Carotenoid biosynthesis	00906	1.02295e-43	75%
Blast2go	Zeatin biosynthesis	00908	1.02295e-43	75%
Blast2go	Flavonoid biosynthesis	00941	1.02295e-43	75%
Blast2go	Anthocyanin biosynthesis	00942	1.02295e-43	75%
Blast2go	Flavone and flavonol biosynthesis	00944	1.02295e-43	75%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	1.02295e-43	75%
Blast2go	Betalain biosynthesis	00965	1.02295e-43	75%
Blast2go	Biosynthesis of type II polyketide products	01057	1.02295e-43	75%
Blast2go	Metabolic pathways	01100	1.02295e-43	75%
Blast2go	Biosynthesis of secondary metabolites	01110	1.02295e-43	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	1.02295e-43	75%
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	1.02295e-43	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKT4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 114 - 490

Fln protein: S*PWLSLISLGVPLLAVPQQSDQTTNSLYIAEIWKTGLRLNKRPADGLVGKEAVEKCIKIVMESEMGVELRENASRWKKLSREAMGESGSSNKNIQEFVEDIARRASSLPLSG*

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCAGTTTAGGGGTACCCCTTTTGGCTGTTCCTCAACAGAGCGATCAGACGACGAATTCCCTTTACATCGCAGAGATATGGAAGACAGGACTGAGATTAAATAAGCGACCCGCAGATGGACTGGTGGGGAAGGAGGCTGTGGAGAAATGTATAAAGATTGTTATGGAAAGCGAAATGGGTGTTGAGCTGAGGGAGAACGCTTCACGGTGGAAGAAATTATCGAGGGAGGCAATGGGAGAAAGCGGATCTTCCAATAAAAATATTCAAGAATTTGTTGAGGATATTGCTCGCAGAGCATCCTCATTGCCATTATCCGGTTAA___TGCTCTCATGGATTTCTGAATAATACTATGCTGCAGTAGTCCCTGCCGTGCCTTTGAAGAAAGGTTCATATGGACATTGTCAATTGCCGA

Fln Alignment:

Contig5663___LSLISLGVPLLAVPQQSDQTTNSLYIAEIWKTGLRLNKRPADGLVGKEAVEKCIKIVMESEMGVELRENASRWKKLSREAMGESGSSNKNIQEFVEDIARRASSLPLSG
B8LKT4______________LESLSLGVPMLALPQKSDQTTNSSYIAEKWKAGMRLNKRSANGLVGKEEVEKCIKIVMESQLGAELRKNALQWKKLSREAMVKGGSSDKNIQEFVEEIIDRARPSSLSG

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
42		66	33		0.997452
44		33		66	0.997452
45			33	66	0.997452
48	33		66		0.997452
50		33		66	0.997452
51			66	33	0.997452
53			33	66	0.997452
54		66	33		0.997452
57		66	33		0.997452
58	33		33	33	0.997753
60		33	33	33	0.997753
61	66		33		0.997452
63	66	33			0.997452
64			66	33	0.997452
66	33		66		0.997452
83		66		33	0.997452
86	33			66	0.997452
161			25	75	0.996473
164			75	25	0.996473
179	25		75		0.996473
198	75		25		0.996473
206			25	75	0.996473
227	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain