SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5338

Length: 1152 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5338 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transcription factor DcMYB5 [Daucus carota]	-	-	71%
FL-Next	sp=Transcription factor MYB3; Arabidopsis thaliana (Mouse-ear cress).	-	-	55%
Blast2go	transcription factor tt2-like	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	73%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Myb-related protein P, C-terminal	IPR010588	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9S9K9

Fln msg: your sequence is longer than subject: 321 - 257

Fln protein: MCFLYIHSNAIHGGGQRRSSGVWNYRQIISKMGRSPCCSNQGLNRGAWTKMEDMILSDYILNHGDGEWRLLPQKAGLKRCGKSCRLRWTNYLRPNIKRGNISIDEEDLIVRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTRLRKKLLPTNESQPHLISKNATTSSKSPSVLQDHVLKTIPVKTTAVRYSEMVRPNRCDGYGRSKSSSNEAFKLCESKETTNSSLPCSELLVNDSITYDCSKRTALAMADVNPPETETGNSICCMWNLTDQRSLDSHYLGGDSATLSEYLSKLNYLSSPDCSLFSSPSDCLTYFGLEEFN*

Protein Length: 322

Fln nts: ACTAA_-_ATGTGCTTTCTATATATACATTCAAACGCCATCCATGGGGGAGGCCAAAGGAGATCATCAGGTGTGTGGAATTACAGGCAAATAATATCGAAGATGGGTAGATCTCCTTGCTGCTCAAACCAAGGCCTCAACCGCGGAGCCTGGACGAAAATGGAGGATATGATTCTCTCGGACTACATCCTAAATCATGGAGATGGTGAATGGAGACTTCTTCCTCAAAAAGCAGGTCTTAAGCGGTGCGGAAAGAGTTGTAGATTGCGTTGGACGAACTATCTCCGTCCCAACATTAAACGTGGAAACATTTCCATCGATGAAGAGGATCTCATTGTTCGGCTGCATCGCCTTCTTGGCAATCGGTGGTCACTGATAGCGGGACGACTACCTGGGCGAACAGATAACGAGATCAAGAACTACTGGAACACTCGTCTGCGCAAAAAACTGCTGCCAACAAACGAGTCTCAACCGCATTTGATTTCAAAAAATGCGACGACAAGCTCAAAATCTCCTTCTGTTCTCCAAGATCATGTGCTCAAAACGATCCCCGTCAAAACAACGGCGGTGCGATACTCTGAAATGGTAAGACCAAATCGTTGCGACGGTTATGGCCGGAGTAAATCTAGTTCAAACGAAGCCTTCAAGTTATGTGAGAGTAAAGAAACTACAAATTCCTCACTGCCATGCTCTGAGTTACTTGTGAATGATTCCATTACATATGATTGTTCGAAGCGCACTGCCTTGGCGATGGCAGATGTCAATCCTCCTGAAACAGAAACCGGAAACTCTATCTGCTGTATGTGGAATTTAACAGACCAGAGATCCCTAGATTCGCATTATCTTGGAGGAGACTCGGCTACTTTATCAGAGTATTTGTCTAAACTGAATTATCTATCGTCTCCCGACTGCAGTCTTTTCTCCTCTCCATCTGACTGTCTGACCTATTTTGGGCTTGAAGAGTTTAACTAG___GGAATCAGCATTGGCGACAGAGACGAATGAGTTTGAATATATGCTTTCTGATCCAAGCCATATGCAGAGCATTAACAACTTTATGGTTAGCATTGGCGGCAGAGACGAAAGAGTTTGAATATATGCTTTCTGATCCAAGCCATATGCAGAGCATTAACAACTCTATGGTCTTTTTTTCAGTAAG

Fln Alignment:

Contig5338___MGRSPCCSNQGLNRGAWTKMEDMILSDYILNHGDGEWRLLPQKAGLKRCGKSCRLRWTNYLRPNIKRGNISIDEEDLIVRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTRLRKKLLP--TNESQPHLISKNATTSSKSPSVLQDHVLKTI------PVKTTAVRYSEMVRPNRCDGYGRS--KSSSNE
Q9S9K9______________MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNSHRLINESVV----SPSSLQNDVVETIHLDFSGPVKPEPVR-EEIGMVNNCESSGTTSEKDYGNE

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
389	33		66		0.997452
409		33		66	1.0
448	66		33		0.997452
455	50		50		1.0
457	66		33		1.0
496			11	88	0.923564
502		44	55		1.0
522		44		55	1.0
541		37	62		1.0
547	75		25		1.0
555		62		37	1.0
606		28		71	1.0
613		71		28	1.0
621		11	66	22	0.999999
634			66	33	1.0
638	22		77		0.999999
658		11		88	0.923564
662			66	33	1.0
670			12	87	0.992554
679		87	12		0.992554
684			75	25	1.0
685		25	75		1.0
694		75	25		1.0
696		87		12	0.992554
710	12		87		0.992554
711			25	75	1.0
720			75	25	1.0
724	20		80		0.999996
811	90			10	0.90298
817		20		80	0.999996
842	70		30		1.0
878		22		77	0.999999
919	80	20			0.995493
958	28			71	1.0
970			66	33	1.0
1015	25		75		0.996473
1041	75	25			0.996473
1098	25			75	0.996473
1113		66	33		0.997452
1115	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain