SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5200

Length: 1879 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5200 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitogen activated protein kinase 6 n=2 Tax=Pinaceae RepID=C7ENI3_PINTA	-	-	98%
FL-Next	tr=Mitogen activated protein kinase 6; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	map kinase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase.	EC:2.7.11.24	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	conjugation	GO:0000746	Biological Process	91%
Blast2go	mitosis	GO:0007067	Biological Process	91%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	91%
Blast2go	cell division	GO:0051301	Biological Process	91%
Blast2go	MAP kinase activity	GO:0004707	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C7ENI3

Fln msg:

Fln protein: MEAAAAPVQSTDTLMSDAPQAAGSNLMDNIPAVLSHGGRFVQYNIFGNIFEVTAKYKPPLLPIGKGAYGIVCSAMNSETKEQVAIKKIANAFDNRIDAKRTLREIKLLRHMDHENVVAIRDIIPPPQREAFDDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARITSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRQPLFPGRDHVHQLRLLTELIGTPTEADLGFVRSDNARRFIRQLPQYPRQSFTQKFPHVHALAIDLCERMLTFDPNQRITVEEALAHPYLANLHDISDEPTCAMPFSFDFEQHTLTEDQMKELIYREALVFNPEYAQ*

Protein Length: 392

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTTTGTTGTTGTGTACATAAGCATTTCGATTCTCTTCGCGTCTGCAGAAATCCTTTCTAGGCCACTCACAGGTCAAGGGTTCGATCTACGCCCCGACATCTTTGGCTCTGTTCCCCTCAGATTTCAGCG_-_ATGGAGGCCGCAGCAGCTCCAGTTCAATCGACGGACACGCTCATGTCCGACGCGCCTCAGGCCGCCGGGTCGAATCTCATGGACAACATCCCTGCAGTACTCAGTCACGGCGGCCGCTTCGTGCAGTATAATATCTTTGGGAATATTTTCGAAGTCACAGCCAAGTACAAACCACCTCTGTTGCCTATCGGGAAAGGAGCTTACGGGATCGTCTGCTCTGCAATGAACTCTGAGACAAAAGAGCAAGTTGCCATCAAGAAGATAGCCAATGCCTTTGACAATCGCATAGATGCAAAGCGAACTCTTCGGGAAATCAAGTTGCTCCGACATATGGATCATGAAAATGTAGTTGCCATAAGAGACATTATACCTCCTCCACAAAGAGAAGCCTTTGATGATGTATACATTGCATATGAGTTAATGGATACTGATCTCCATCAAATTATTCGCTCCAATCAAGGCTTATCTGAGGAACACTGTCAGTACTTTTTGTATCAGATTTTGCGAGGATTGAAATATATACACTCTGCAAATGTCCTTCATAGGGACTTGAAGCCCAGCAATCTTCTATTGAATGCAAATTGTGATCTGAAGATATGTGATTTTGGTTTGGCTCGGATTACTTCTGAAACCGATTTCATGACCGAATATGTGGTTACCAGATGGTATAGAGCTCCAGAATTGCTGCTGAATTCATCAGATTATACTGCAGCCATTGATGTCTGGTCAGTAGGCTGTATTTTCATGGAATTGATGAACAGACAACCCTTATTCCCTGGAAGGGATCATGTGCATCAGCTGCGTTTATTGACAGAGTTGATTGGCACGCCAACTGAGGCTGACCTTGGATTTGTTCGGAGTGATAATGCTAGAAGATTTATTCGGCAACTGCCACAGTATCCAAGGCAGTCATTTACTCAAAAATTTCCTCATGTGCATGCATTAGCAATTGACCTTTGTGAAAGAATGCTGACATTTGATCCAAATCAGAGGATCACAGTGGAAGAGGCACTTGCTCATCCGTACCTGGCAAATCTACATGATATCAGTGATGAACCCACTTGTGCTATGCCTTTCAGCTTTGATTTTGAGCAGCATACCTTAACAGAGGATCAGATGAAAGAGCTGATCTATAGAGAGGCTCTGGTTTTTAATCCAGAGTATGCACAGTAA___AGTAACATTTTGTGCAGACAGTGGTTACAACTTTGAAAATTGAAAGCTGGCCTATTTTCTTGTTTGTAGCAGTCATAGTGTTATAAATATTTATTGAGTTTTGGGAGCAATGTAAATATGTGTATTAAAACCACATTTGAGTCCAGGGCAAGTTGTAAGGGGGATAATGATTGAAGGGGTGTAAAGCATTTATATTGGAGTATGTCAACCTGATATGCTACAACTTGGTGAGATGCATTGTGCATGTATGAGTCACAGACCTGAACACTGCGGTAAAACTGTATTATGCTTTATTCTTCTTTATCTTCAAACTTCAAGGGGTTGTATGAAGATAATTTTTGTTAGAATACAAGTGAAGAAAAGTTGAGTCTGGCAGTTTGCCACTATATGCTCAATATGGTATTTTGTCTAATTCTCCTTTCAGATAAGTGATGAACTTGGACCTTTGGCTATTGTGTACTGATATGAATAAAATAAATTCCTGCTTTACTTCACCCCAGATCGTTGGTTTTGGATTTTCAGCTTTTGATTGTCTGATTTATCTACAA

Fln Alignment:

Contig5200___MEAAAAPVQSTDTLMSDAPQAAGSNLMDNIPAVLSHGGRFVQYNIFGNIFEVTAKYKPPLLPIGKGAYGIVCSAMNSETKEQVAIKKIANAFDNRIDAKRTLREIKLLRHMDHENVVAIRDIIPPPQREAFDDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARITSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRQPLFPGRDHVHQLRLLTELIGTPTEADLGFVRSDNARRFIRQLPQYPRQSFTQKFPHVHALAIDLCERMLTFDPNQRITVEEALAHPYLANLHDISDEPTCAMPFSFDFEQHTLTEDQMKELIYREALVFNPEYAQ
C7ENI3______________MEAAAAPVQSTDTLMSDAPQAAGSNPMDNIPAVLSHGGRFVQYNIFGNIFEVTAKYKPPLLPIGKGAYGIVCSAMNSETKEQVAIKKIANAFDNRIDAKRTLREIKLLRHMDHENVVAIRDIIPPPQREAFDDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARITSETDFMTEYVVTRWYRAPELLLNSADYTAAIDVWSVGCIFMELMNRQPLFPGRDHVHQLRLLTELIGTPTEADLGFVRSDNARRFIRQLPQYPRQSFTQKFPHVHALAIDLCEKMLTFDPNQRITVEEALAHPYLANLHDISDEPICAMPFSFDFEQHTLTEDQMKELIYREALVFNPEYAQ

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
105	11		88		0.923564
400	6		80	13	0.999961
401		64	14		1.0
1559		7		92	0.999602
1568		92	7		0.999532
1570	7			92	0.999532
1573	88	7			0.999079
1574	92	8			0.999718
1578	91		8		0.999766
1579		4	8	83	0.998844
1582	8	91			0.999807
1584	91		8		0.999807
1586	91	8			0.999807
1745			93	6	0.99903
1758	6		93		0.999153
1764	90	6		3	0.997073
1803	9			90	0.999842
1807	4	23	71		1.0
1810	5	5	78	10	0.999769
1833		8	16	75	0.99999
1835	8			75	0.99999
1845		75	16	8	0.99999
1846	62	12	25		1.0
1847	62	12		25	1.0
1849	85	14			0.993533
1850	42	42		14	1.0
1851	50	16	33		1.0
1852	83	16			0.994512
1853	66	33			1.0
1854	50		33	16	1.0
1856	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain