SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5079

Length: 1299 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5079

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-N-acetylglucosamine transporter-like protein [Arabidopsis thaliana] gb\|AAF79647.1\|AC025416_21 F5O11.33 [Arabidopsis thaliana] gb\|AAF88097.1\|AC025417_25 T12C24.13 [Arabidopsis thaliana] gb\|AAV68813.1\| hypothetical protein AT1G12600 [Arabidopsis thalian	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	adenosine 3 -phospho 5 -phosphosulfate	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	0.0	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	UAA transporter	IPR013657	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRK5

Fln msg:

Fln protein: MGNDDQVITLLGITLTGRPKWQQLLLCSCGFFFGYLINGVCEEYVYNRLQFSYGWYFTFVQGFVYLVLIYLQGFRVKHIVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLKRKYPVHEYVSAVLLVVGLIIFTLADAQTSPNFNVLGVIMVSGALILDSFLGNLQEAIFKMNPATSQMEMLFCSTAVGLPLLIIPMVLTGELFRAWTSCSQHLYVYLVLIFEAMATFVGQLSVLCLIAIFGAAATAMVTTARKALTLFLSYIIFTKPLTEQHGTGLLLISMGIILKMVPLPDPQSIARSNPKSAQNIPQNEEEGKPLVSDSA*

Protein Length: 347

Fln nts: CGTCGTGACCTTGGCTGTGAGTCAGTTACATGAAATACGCAGGAGATGGTAATGGCTGATTGCGGTTCGGGAGCTCCAAATGCCCAGAGGCATGGCAGATGGAACACAATTGCCTGAATCATAGGGAGAGCAAATATACAGGTGGGGGGAAACAAAATTTACGATTTAGAAGGGCCGGGCCGGGGGCCTTGTATTCTGGAAATACAAGGAAAA_-_ATGGGAAATGATGATCAGGTCATCACATTGCTCGGCATAACGCTCACTGGAAGGCCTAAATGGCAGCAGCTTTTGCTGTGCAGTTGTGGATTCTTCTTTGGATATTTGATCAATGGTGTCTGTGAGGAATACGTATATAACAGGCTGCAATTCAGCTATGGATGGTACTTCACTTTTGTACAAGGTTTCGTGTACTTGGTTCTTATTTATTTGCAGGGCTTCAGAGTAAAGCACATCGTAAATCCATGGAAAACATATGTGAAACTCTCTGCTGTTCTTATGGGATCCCATGGACTGACCAAAGGATCCCTTGCTTTTCTTAATTATCCTGCTCAGCTGATGTTCAAATCTACAAAGGTTCTACCGGTGATGGTGATGGGAGCTTTTATACCTGGGCTGAAGCGGAAGTATCCTGTGCATGAATATGTTTCTGCTGTACTTCTCGTAGTCGGTTTAATCATTTTCACGCTCGCGGATGCTCAAACGTCCCCGAATTTCAATGTTTTGGGAGTGATAATGGTCTCTGGAGCTCTGATACTGGATTCTTTCCTTGGGAATTTACAGGAGGCAATATTTAAAATGAATCCAGCCACTTCACAGATGGAAATGCTGTTCTGTTCGACGGCAGTTGGGCTACCCCTTTTGATCATACCCATGGTGCTAACGGGTGAGCTGTTCAGAGCATGGACCTCCTGCTCCCAGCATTTGTACGTTTATCTGGTGCTCATCTTTGAAGCGATGGCGACTTTCGTTGGTCAGCTATCAGTGCTCTGTCTAATCGCAATTTTCGGTGCCGCGGCAACTGCCATGGTGACCACAGCAAGAAAGGCTCTCACTCTTTTCCTGTCATATATAATTTTCACCAAACCCCTGACGGAGCAGCATGGGACCGGGCTGCTGCTTATATCCATGGGAATCATTCTGAAAATGGTACCACTACCGGATCCCCAGTCGATCGCGAGAAGCAATCCGAAATCTGCCCAAAATATCCCACAAAACGAGGAAGAAGGGAAGCCACTAGTATCGGATTCTGCTTGA___TCGGTCGGTCGCACGCCATTTGTTTCGGGAGGAACAACATTTTCCGGG

Fln Alignment:

Contig5079___QLLLCSCGFFFGYLINGVCEEYVY------NRLQFSYGWYFTFVQGFVYLVLIYLQ----GFRVKHIVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLKRKYPVHEYVSAVLLVVGLIIFTLADAQTS-------PNFNVLGVIMVSGALILDSFLGNLQEAIFKMNPATSQMEMLFCSTAVGLPLLIIPMVL--TGELFRAWTSCSQHLYVYLVLIFEAMATFVGQLSVLCLIAIFGAAATAMVTTARKALTLFLSYIIFTKPLTEQHGTGLLLISMGI
A9NRK5______________RLLFCVGGIFGAYIYQGFLQETLSTKRFGPNGQRFQHLPFLNFAQNVVCLAWSYLMITLWSTKSSGAAPPWKYWSPSITNTIGP-ALGLQALKYISYPAQVLVKSSKMIPVMLVGALFYGI--KYTVPEYICTFLVASGVSLFALSKSSSKTVSKLAHPN-APWGYGLCLANLLLDGYTNSTQDNIKRRYPKTNGWDIMLGMNLWGSIYSFFYMFLFPGGGGFEALQFCKQHPEAAWDILWFCVCGAIGQNFIFMTISLFGSLANTTITTVRKFFSILVSSLFSGNPLSDRQWISVFMVFGGL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1298		66		33	0.997452
1299		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain