SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5077

Length: 2092 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene5077
TGAATCTATTGAACTGGATGAAGCAGCTCAGTATGACCCATATCCACATCGGCATCTCGTTTATCAGTTGTGCCTTGCACAAGTTCTTCTGTTCCCCTTACTGTATCTTGCATTGGCTTAGCAACGCCAATTGCAGTGGTTGCTAGGTCAAAGGGACCTTTTGTTCCCCCAATAAATCCAGTGCAAAGCATAGGAGAACTAGGCTGGAAAGGATCTGGAGCAACAAGTGCTTTTCGTCCAGCAGAACCTAGAGAAATAACTGATCTGCAGCATCCCGTCTTTAAATTACCAATTTCAGATGCTGCTGGATTTAATTTAATTGGAAAAGGAAACAGAGCTTCATTAGATATTGATCTTAATATGGCTTATGAGAAAACATCTGAAGATGGGGTAATAACAGTGCATTTATCTTCTCAAATATGTGAACCATCAACAAGCTCTGGATGCAGAGATATGAGTGGAAAAGATTTTATATCTTCAATAGCTGAACCTTTTGCTCCTACCGGGCCTTGTAGTCCTGTGAAGTCAGATTTAGACTTGAATCGCACTGATGATAGTGGGGAGAATGAACTGATCAAAATGCCTCTTGGTACCAGTGCTGAAAATTTTGGATTGACTTTGAAGACTGCCACCAGTGCATCGTCCCTTGGAGCTTCATGTGTTCTGAGAGATCTTGATTTGAATAATGGGCCCACTTTTGATGATAGCAGGGATGAATTTCTGCCTCAGAATTTTAGCTCATCTTCCCAGCCTGTAGCTGACCTGAGAATGAAGGGCGAACTATTCAATTCATCATCTTGGTTTTCTGCTGGAGATGCCTTTCAGTCACTTACAATACCTTTGCATTTTAATGAAAGGACAGATCATCAAGTTATCACTACAGCTGCATCTGCATCTCAGTCTACTTGGAGTTCATTACCTGGTCCTAATTTGTTCAGTGATGATATATATAAAGGGAAGCCACCATTCTCTTCAGATCCTATTATTTCCTTTTCAAATACCACTAGTAAGTCATACCCATTTACTGGATTTCCTTCTGGGTCAAGTTTTCCTCTCAACTCTCCTTCTTTTTCAAGTGGTCCACTTTCCTATCCAGAATCATTAGGACCAGGATGTTTTCCTGCAGTTCCCTCTCAGGTAGTCCCCACAGGGTCACTCTCATCATCACATGTGAGACCATACTTTATAAGCCCGATGGTGGCATCTGGGACAGAGAGCAGTAGCACATGCACATGGACTACACCAAATCTTGATTTAAATACAGGTCCTGAGATGGGTGACATCTCTTACAGGGAAGAGAGGTTAGTCACCAGGGAACCTACAATAAATTGTCCTGTTTCTTTGGAGCAGATGAAAGCATTCTGCCATGGACCAGCTTCAGGTATGTCTTCAAAGAGAAAAGAACCTGAAGAAGCTTGGGATGTGCATAGATCTGGATATGAGCAGTCTATTTGGCGGTAAAGTTATTTTTGGCTCATGAGGTATTACATGAAATCGGCTGTCAATTGATACGCCAGACAGGCAAATTTTTGTAAACAATGTGCTTGCAAGCGATCAATTTCACTGCCATCCTCGTAATTGACTATTTGAATTCAAATGCCAGCCATTAATCAGTGCATTTTGCATCCTTTAAAGGATTTGCTGACCTGTAATACTTAACATTCTGGCACTTAGAAAAGTGACAATGTGAAAGCTTTGTCCACCAGAATTGTGTAAATCTAAACATGCACTCTGTGCTGTTTCTTTCTATGGAGTTCCATGCAATGCTAACTCTGGTTTGTGATTGCTGTAAATTTTGGAGTGTTAAAAGATGATGGTTTGTTCGTTCCTTGTCGTCTTTTAAAGGTACCTGCATTTTCCAATGACCCATTGAGAACATAGGGTTCATAAATTTAAGCAAAGCAGTGTATCTGCCTTATAGTTACAAGTAAATCTGTACAGATGTATTTGCTTCTAAATTTAGTACATATCTATATGTAGAGCACGGAACTTGGGAACAGTATTATGATGTTATCCTTTTTCTTATAACAATGTTCCGGCTTGTTTTCGTCATGCTTATGCATGATGTGGATGAGAATATATTCTAGCTTCC

Ace file of the UniGene sp_v2.0_unigene5077 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0742000 protein n=2 Tax=Oryza sativa RepID=Q6Z7R3_ORYSJ	-	-	4.0e-37	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	bah and tfiis domain-containing protein	-	-	0.0	48%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMK0

Fln msg: W1: There is no M at the beginning, your sequence is longer than subject: 475 - 443

Fln protein: PISTSASRLSVVPCTSSSVPLTVSCIGLATPIAVVARSKGPFVPPINPVQSIGELGWKGSGATSAFRPAEPREITDLQHPVFKLPISDAAGFNLIGKGNRASLDIDLNMAYEKTSEDGVITVHLSSQICEPSTSSGCRDMSGKDFISSIAEPFAPTGPCSPVKSDLDLNRTDDSGENELIKMPLGTSAENFGLTLKTATSASSLGASCVLRDLDLNNGPTFDDSRDEFLPQNFSSSSQPVADLRMKGELFNSSSWFSAGDAFQSLTIPLHFNERTDHQVITTAASASQSTWSSLPGPNLFSDDIYKGKPPFSSDPIISFSNTTSKSYPFTGFPSGSSFPLNSPSFSSGPLSYPESLGPGCFPAVPSQVVPTGSLSSSHVRPYFISPMVASGTESSSTCTWTTPNLDLNTGPEMGDISYREERLVTREPTINCPVSLEQMKAFCHGPASGMSSKRKEPEEAWDVHRSGYEQSIWR*

Protein Length: 476

Fln nts: TGAATCTATTGAACTGGATGAAGCAGCTCAGT_-_ATGACCCATATCCACATCGGCATCTCGTTTATCAGTTGTGCCTTGCACAAGTTCTTCTGTTCCCCTTACTGTATCTTGCATTGGCTTAGCAACGCCAATTGCAGTGGTTGCTAGGTCAAAGGGACCTTTTGTTCCCCCAATAAATCCAGTGCAAAGCATAGGAGAACTAGGCTGGAAAGGATCTGGAGCAACAAGTGCTTTTCGTCCAGCAGAACCTAGAGAAATAACTGATCTGCAGCATCCCGTCTTTAAATTACCAATTTCAGATGCTGCTGGATTTAATTTAATTGGAAAAGGAAACAGAGCTTCATTAGATATTGATCTTAATATGGCTTATGAGAAAACATCTGAAGATGGGGTAATAACAGTGCATTTATCTTCTCAAATATGTGAACCATCAACAAGCTCTGGATGCAGAGATATGAGTGGAAAAGATTTTATATCTTCAATAGCTGAACCTTTTGCTCCTACCGGGCCTTGTAGTCCTGTGAAGTCAGATTTAGACTTGAATCGCACTGATGATAGTGGGGAGAATGAACTGATCAAAATGCCTCTTGGTACCAGTGCTGAAAATTTTGGATTGACTTTGAAGACTGCCACCAGTGCATCGTCCCTTGGAGCTTCATGTGTTCTGAGAGATCTTGATTTGAATAATGGGCCCACTTTTGATGATAGCAGGGATGAATTTCTGCCTCAGAATTTTAGCTCATCTTCCCAGCCTGTAGCTGACCTGAGAATGAAGGGCGAACTATTCAATTCATCATCTTGGTTTTCTGCTGGAGATGCCTTTCAGTCACTTACAATACCTTTGCATTTTAATGAAAGGACAGATCATCAAGTTATCACTACAGCTGCATCTGCATCTCAGTCTACTTGGAGTTCATTACCTGGTCCTAATTTGTTCAGTGATGATATATATAAAGGGAAGCCACCATTCTCTTCAGATCCTATTATTTCCTTTTCAAATACCACTAGTAAGTCATACCCATTTACTGGATTTCCTTCTGGGTCAAGTTTTCCTCTCAACTCTCCTTCTTTTTCAAGTGGTCCACTTTCCTATCCAGAATCATTAGGACCAGGATGTTTTCCTGCAGTTCCCTCTCAGGTAGTCCCCACAGGGTCACTCTCATCATCACATGTGAGACCATACTTTATAAGCCCGATGGTGGCATCTGGGACAGAGAGCAGTAGCACATGCACATGGACTACACCAAATCTTGATTTAAATACAGGTCCTGAGATGGGTGACATCTCTTACAGGGAAGAGAGGTTAGTCACCAGGGAACCTACAATAAATTGTCCTGTTTCTTTGGAGCAGATGAAAGCATTCTGCCATGGACCAGCTTCAGGTATGTCTTCAAAGAGAAAAGAACCTGAAGAAGCTTGGGATGTGCATAGATCTGGATATGAGCAGTCTATTTGGCGGTAAAGTTATTTTTGGCTCATGAGGTATTACATGAAATCGGCTGTCAATTGATACGCCAGACAGGCAAATTTTTGTAAACAATGTGCTTGCAAGCGATCAATTTCACTGCCATCCTCGTAATTGACTATTTGAATTCAAATGCCAGCCATTAATCAGTGCATTTTGCATCCTTTAAAGGATTTGCTGACCTGTAATACTTAACATTCTGGCACTTAGAAAAGTGACAATGTGAAAGCTTTGTCCACCAGAATTGTGTAAATCTAAACATGCACTCTGTGCTGTTTCTTTCTATGGAGTTCCATGCAATGCTAACTCTGGTTTGTGATTGCTGTAAATTTTGGAGTGTTAAAAGATGATGGTTTGTTCGTTCCTTGTCGTCTTTTAAAGGTACCTGCATTTTCCAATGACCCATTGAGAACATAGGGTTCATAAATTTAAGCAAAGCAGTGTATCTGCCTTATAGTTACAAGTAAATCTGTACAGATGTATTTGCTTCTAAATTTAGTACATATCTATATGTAGAGCACGGAACTTGGGAACAGTATTATGATGTTATCCTTTTTCTTATAACAATGTTCCGGCTTGTTTTCGTCATGCTTATGCATGATGTGGATGAGAATATATTCTAGCTTCC

Fln Alignment:

Contig5077___PIAVVARSKGPFVPPINPVQSIGELGWKGSGATSAFRPAEPREITDLQHPVFKLPISDAAGFNLIGKGNRASLDIDLNMAYEKTSEDGVITVHLSSQICEPSTSSGCRDMSGKDFISSIAEPFAPTGPCSPVKSDLDLNRTDDSGENELIKMPLGTSAENFGLTLKTATSASSLGASCVLRDLDLNNGPTFDDSRDEFLPQNFSSSSQPVADLRMKGELFNSSSWFSAGDAFQSLTIPLHFNERTDHQVIXXXXXXXXXXXXSLPGPNLFSDDIYKGKXXXXXXXXXXXSNTTSKSYPFTXXXXXXXXXXXXXXXXXXXXSYPESLGPGCFPAVPSQVVPTGSLSSSHVRPYFISPMVASGTESSSTCTWTTPNLDLNTGPEMGDISYREERLVTREPTINCPVSLEQMKAFCHGPASGMSSKRKEPEEAWDVHRSGYEQSIWR
B8LMK0______________PIAVVARSKGPFIPPVNPVQSIGELGWKGSAATSAFRPAEPREITELQRHVSKIPISDAAAFNSIGKGNRDSLDIDLNVAYERTSEDGVITVHLSSQTCEPSTSSGCRDMSGQDFISSIAEPFAPTGACSPVKSDLDLNRIDDSGENELTKMPLGTSAENFGLTLKSPTSASSLGASCVLRGFDLNDGPTFDDGEDELLPQNFSSSSQPVPDLRMKGELFNSSSWFSPGNAFQALTMPLHFNARTDHQVITTAASAPQSNRSSLSGPNFFSGDIYKGQTSFSPDPIISFSNTMSTSYPFTGFPFGSSFPLNSASFSGGSLSYPESLGPGCFPAVPSQTVTTGSLSSSHVRPYLISPMVPSGTESST--TWPTLNLDLNTGPEMGDISYREERLVTRQPSINDPVSLEQMRAFCHGSASGMASKRKEPEEGWDVHRSGYKQSMWR

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
479	33		66		1.0
650		55		44	1.0
790		57		42	1.0
819		14		85	0.993533
822		83		16	0.994512
862			80	20	0.995493
991	33		66		0.997452
1193	83	16			0.994512
1194			83	16	0.994512
1202	85		14		0.993533
1203	14		85		0.993533
1218		14	85		0.993533
1225	14			85	0.993533
1410	10	90			0.90298
1566	90	10			0.90298
1567	90	10			0.90298
1678	83	16			0.994512
1679		16		83	0.994512
1811	33			66	1.0
1817	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain