SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5016

Length: 1412 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5016

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]	-	-	61%
FL-Next	sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice).	-	-	58%
Blast2go	rna-dependent rna polymerase 6	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	RNA-directed RNA polymerase.	EC:2.7.7.48	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	73%
Blast2go	Metabolic pathways	01100		0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	carpel development	GO:0048440	Biological Process	73%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	73%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	73%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	73%
Blast2go	leaf development	GO:0048366	Biological Process	73%
Blast2go	recognition of pollen	GO:0048544	Biological Process	73%
Blast2go	RNA-directed RNA polymerase activity	GO:0003968	Molecular Function	73%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LHH9

Fln msg: Distance to subject end: 389 aas, your sequence is shorter than subject: 470 - 1218

Fln protein: VHKGIVNYHRITPEFYNLLDPGVTPTKLSTLALRHMLAYTYPVFDALGRFKTVLNWISENPKLLKSPKIVEETIEVRRMVITPTKAYCLAPEVELSNRVLRHFKRFADRFLRVTFMDDGMQAMSSMVLNVRIAPIVKEVSSGSTAYRTAIFERVKKILRKGFKLCGRGYLFLAFSANQLRDRSAWFFAEGKDITVRHIKHWMGNFPQGNVAKHAARMGQCFSSTYCTVEVPPKDIEHLPDIKRNGYEFSDGIGKITPDLAREVVQALQLNFNPPSAFQIRYGGYKGVVATWAAEPGSKFKLSLRPSMKKFESEHTTLEIITWTHFQPCFLNKEIITLLSSLSVPDNAFHHLQNSMVNKLDQMLENVEVAFEVLTTSCTGDLQNTAAMMLSAGFKPQSEPHLRDMLSSIRAVQLEELLTKCRIFVPQGRWLMGCLDEMGELEYGQCFIKVSSPPLEGCFLRHGSSFGERKT

Protein Length: 471

Fln nts: TGTGCACAAGGGCATTGTCAATTATCACAGAATAACGCCTGAGTTTTATAATTTGTTGGATCCTGGTGTGACACCAACCAAGTTGAGTACCCTGGCACTGAGGCATATGCTTGCCTACACATACCCAGTTTTTGATGCCCTTGGAAGATTTAAGACTGTTCTTAACTGGATTTCAGAGAATCCAAAGCTACTGAAGAGCCCAAAGATAGTCGAGGAAACAATTGAAGTGAGGAGAATGGTCATCACACCTACAAAAGCATACTGTCTTGCTCCAGAAGTGGAATTGTCAAACAGAGTCTTAAGGCACTTTAAGAGGTTTGCAGACCGATTTCTGCGAGTAACTTTCATGGATGATGGCATGCAAGCAATGTCCTCCATGGTACTAAATGTGCGTATAGCACCCATTGTTAAAGAAGTTTCCTCTGGTTCTACTGCATATAGGACAGCTATTTTTGAGCGAGTAAAGAAAATACTCCGTAAGGGTTTTAAGCTATGTGGACGAGGCTACTTGTTTCTAGCATTCTCTGCAAATCAATTGAGAGACCGTTCTGCATGGTTCTTTGCTGAAGGGAAGGATATTACAGTACGACATATCAAGCACTGGATGGGGAACTTCCCCCAAGGCAATGTTGCCAAGCATGCTGCAAGGATGGGCCAATGCTTTTCTTCCACCTATTGTACAGTGGAGGTTCCACCAAAAGACATTGAGCACCTTCCAGATATTAAAAGGAATGGTTACGAATTTTCTGATGGTATAGGAAAAATTACACCAGATCTTGCCAGGGAAGTTGTTCAAGCACTGCAGTTGAATTTCAACCCTCCCTCAGCGTTTCAGATCAGGTATGGTGGATACAAGGGCGTGGTTGCAACTTGGGCAGCAGAACCAGGAAGTAAATTTAAGCTCTCATTGAGACCCAGTATGAAGAAGTTTGAGTCTGAACACACAACACTTGAAATAATTACTTGGACACATTTTCAGCCCTGCTTTTTGAACAAGGAAATAATTACTCTCTTGTCATCCTTGTCGGTCCCTGACAATGCTTTTCATCATTTACAAAATTCAATGGTTAATAAACTCGATCAAATGCTTGAAAATGTTGAAGTGGCATTTGAGGTATTGACAACATCATGCACAGGAGATTTGCAAAACACCGCTGCTATGATGCTAAGCGCTGGTTTTAAACCCCAAAGCGAGCCTCACTTAAGAGACATGCTTTCTTCTATAAGAGCTGTCCAATTAGAAGAGCTTTTGACAAAATGTAGGATTTTCGTTCCCCAAGGTAGATGGTTAATGGGCTGTTTGGATGAAATGGGGGAGTTGGAATATGGGCAATGTTTCATCAAGGTTTCAAGCCCGCCCTTGGAGGGCTGTTTTCTCAGGCATGGCTCAAGCTTTGGAGAGAGGAAAACAA

Fln Alignment:

Contig5016___VHKGIVNYHRITPEFYNLLDPGVTPTKLSTLALRHMLAYTYPVFDALGRFKTVLNWISENPKLLKSPKIVEETIEVRRMVITPTKAYCLAPEVELSNRVLRHFKRFADRFLRVTFMDDGMQAMSSMVLNVRIAPIVKEVSSGSTAYRTAIFERVKKILRKGFKLCGRGYLFLAFSANQLRDRSAWFFAEGKDITVRHIKHWMGNFPQGNVAKHAARMGQCFSSTYCTVEVPPKDI-EHLPDIKRNGYEFSDGIGKITPDLAREVVQALQLNFNPPSAFQIRYGGYKGVVATWAAEPGSKFKLSLRPSMKKFESEHTTLEIITWTHFQPCFLNKEIITLLSSLSVPDNAFHHLQNSMVNKLDQMLENVEVAFEVLTTSCTGDLQNTAAMMLSAGFKPQSEPHLRDMLSSIRAVQLEELLTKCRIFVPQGRWLMGCLDEMGELEYGQCFIKVSSPPLEGCFLRHGSSF
Q8LHH9______________VHKGIINQHQLTPEFFSLL--GRSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARNPKLLCS-KVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGH-GDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADD-GNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
948		80		20	0.995493
949	80		20		0.995493
950		80	20		0.995493
951	80		20		0.995493
1019	16	83			0.994512
1020	16			83	0.994512
1160		33		66	1.0
1304		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain