SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4959

Length: 1584 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4959 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	4-coumarate--CoA ligase-like 5 n=3 Tax=Arabidopsis RepID=4CLL5_ARATH	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	acyl:coa ligase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fatty-acyl-CoA synthase.	EC:2.3.1.86	-	0.0	72%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid biosynthesis	00061		72%
Blast2go	Metabolic pathways	01100		72%
Blast2go	4-coumarate--CoA ligase.	EC:6.2.1.12	-	72%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	72%
Blast2go	Phenylalanine metabolism	00360	72%
Blast2go	Phenylpropanoid biosynthesis	00940	72%
Blast2go	Biosynthesis of phenylpropanoids	01061	72%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	72%
Blast2go	Metabolic pathways	01100	72%
Blast2go	Biosynthesis of secondary metabolites	01110	72%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	72%
Blast2go	response to wounding	GO:0009611	Biological Process	72%
Blast2go	phenylpropanoid metabolic process	GO:0009698	Biological Process	72%
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	72%
Blast2go	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	72%
Blast2go	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	72%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	72%
Blast2go	peroxisome	GO:0005777	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP93

Fln msg: Overlapping hits, possible frame ERROR between 232 and 232, your sequence is shorter than subject: 511 - 548

Fln protein: ANYIFSHHHHTQQVASIDASSGLSLSYPALRQNVRALAAGLHGLGIRKGDVVLVISPNTIALPCIYLAILSIGAILxxANPLSTEAEIKKQAEDSKPVMVFTLPNLIKKVG*PGLPFILIEGTTEEGLDSGCISTLNLLLQSDISGFPSVDIKQEDTATLLYSSGTTGKSKGVISTHRNLIAMISGVRNGRDDVEGGENICLCFIPLFHVFGFFYTLACIAAGSTMVFMPKFDLAEMLSAIQKYRVNSVPASPPILVALSKSPLVAKYVLTSLSSINCGGAPLGKDVIDNFTARFPTVQVLQGYGLTESSGAVAMTMTDEENGHYGTAGLLSANVEAKVVDTASGKAMPPNHKGELWLRGPTIMKGYLGNDEATTSTLDSEGWLKTGDLCYIDEEGFLFVVDRIKELIKYKAFQVAPAELEELLLSNPDISDAAVIPYPDDEAGQIPMAFVVRKSDSNLSKEDVINFVAKQVSPYKKVRRVAFVNSIPKSPSGKILRKDLIHQALSTSRL*

Protein Length: 512

Fln nts: CGCCAACTATATTTTTTCCCATCACCACCACACGCAGCAGGTCGCCTCCATCGATGCCTCCAGTGGCCTCTCGCTCTCTTATCCTGCCCTCCGCCAAAATGTTAGAGCACTCGCTGCCGGACTGCATGGCCTGGGGATTCGAAAAGGCGACGTGGTATTGGTCATATCTCCCAATACCATCGCCCTTCCATGCATTTACCTCGCCATTCTCTCCATCGGAGCAATCCTGxxxxxxGCCAATCCGCTCAGCACAGAGGCCGAGATTAAGAAGCAGGCAGAGGATTCGAAACCGGTAATGGTCTTCACCCTACCAAATCTGATAAAAAAGGTCGGTTGACCTGGCTTGCCATTCATTCTCATTGAGGGAACCACAGAGGAAGGCTTGGACTCGGGCTGTATTTCTACCTTAAACCTCCTCTTGCAGTCCGATATTAGCGGCTTCCCTTCAGTGGACATCAAGCAGGAGGACACTGCCACGCTTCTCTACTCGTCGGGGACAACGGGCAAGAGCAAGGGAGTCATCTCCACGCATAGAAATCTCATTGCCATGATATCAGGAGTTCGGAACGGTCGTGACGATGTGGAGGGAGGGGAGAATATATGTTTATGCTTCATCCCGCTGTTTCATGTTTTTGGGTTTTTCTATACACTTGCTTGCATTGCAGCTGGGAGTACCATGGTATTCATGCCCAAATTTGATTTGGCTGAAATGCTTTCGGCCATACAGAAGTACAGAGTGAACTCCGTGCCCGCTTCTCCACCCATTCTCGTCGCTTTAAGTAAGTCTCCTCTAGTTGCCAAGTACGTTTTGACTTCGCTAAGCTCGATAAACTGCGGTGGAGCTCCTCTTGGCAAAGACGTCATCGACAACTTCACTGCTCGATTTCCAACTGTTCAAGTTCTACAGGGTTATGGATTGACAGAGTCTAGCGGGGCCGTAGCCATGACTATGACGGATGAAGAAAACGGACATTATGGAACGGCAGGCTTGCTTTCAGCTAATGTAGAAGCCAAAGTGGTGGACACAGCCAGTGGCAAAGCTATGCCTCCCAACCATAAAGGCGAGCTCTGGTTGCGAGGACCTACAATCATGAAAGGTTATTTGGGTAATGATGAAGCAACTACATCAACTTTAGACTCAGAGGGATGGCTGAAAACTGGGGATCTATGTTACATTGATGAGGAGGGTTTCCTTTTTGTTGTGGACAGAATAAAGGAGTTGATAAAGTACAAAGCATTTCAGGTTGCTCCAGCAGAGTTAGAGGAGTTGCTCCTCTCAAACCCAGATATTAGTGATGCTGCTGTTATTCCGTATCCTGATGATGAAGCAGGTCAAATACCAATGGCATTTGTTGTGAGGAAGTCTGACAGCAATCTCTCCAAAGAGGATGTAATAAATTTTGTTGCAAAACAGGTTTCACCATACAAGAAGGTACGCCGAGTAGCATTTGTCAATTCAATTCCCAAGTCCCCGTCTGGCAAGATCTTAAGAAAAGATTTGATTCATCAGGCTCTGTCCACTTCCAGATTGTGATTCCTACAGTCAACCTTTAATCTTTGTGAAGCAGTCATCTGCTAGTTTTTA

Fln Alignment:

Contig4959___YIFSHHHHTQQVASIDASSGLSLSYPALRQNVRALAAGLHGLGIRKGDVVLVISPNTIALPCIYLAILSIGAILTTANPLSTEAEIKKQAEDSKPVMVFTLPNLIKKVG*PGLPFILIEGTTEEGLDSGCISTLNLLLQSDISGFPSVDIKQEDTATLLYSSGTTGKSKGVISTHRNLIAMISGVRNGRDDVEGGENICLCFIPLFHVFGFFYTLACIAAGSTMVFMPKFDLAEMLSAIQKYRVNSVPASPPILVALSKSPLVAKYVLTSLSSINCGGAPLGKDVIDNFTARFPTVQVLQGYGLTESSGAVAMTMTDEENGHYGTAGLLSANVEAKVVDTASGKAMPPNHKGELWLRGPTIMKGYLGNDEATTSTLDSEGWLKTGDLCYIDEEGFLFVVDRIKELIKYKAFQVAPAELEELLLSNPDISDAAVIPYPDDEAGQIPMAFVVRKSDSNLSKEDVINFVAKQVSPYKKVRRVAFVNSIPKSPSGKILRKDLIHQALSTSRL
B8LP93______________YIFSLQHNMQQIAFIDGPSGTTLTYSALRLKVRALAAGLHGLGIRKGDVVLVISSNSIALPCIHLAILSIGAILTTANPLSTEREIVTQVKDSKPVIAFTLSHLIHKLRATQIPIILIQGT----LESRCVTTLHDLLQSDLKDMPSIDIKQDDTATLLYSSGTTGKSKGVVSTHGNYIATIAGNRV-RYETEGCK-MYICSMPLFHIYGLRFLVCTLAAGATIVVPPKFDMEEILRSIERYRVTLLPTVPSVLAALAKSTGAQKYDLGSLQQISLGGAPLGKDVTLTFNAKFPRIQIRQGYGLTETTGAIAYTNSDEENRRNGTVGLLSDVVEAKVVDPDSAKPLPPNQRGELWLRGPTVMKGYFGNEHATATTLDSEGWLRTGDLCYFDEEGFLFVVDRLKDLIKYKAYQVAPAELEELLLSHPEISEAAVIPYPDQEAGQIPMAFVARSPSSNLSESDVIKFVAEQVVHYKKIRRVAFTNSIPKNASGKILRKDLIEKNVPTSRL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1085		14		85	0.993533
1086		14		85	0.993533
1087		14	85		0.993533
1088	14	85			0.993533
1176	20		80		0.995493
1179	80			20	0.995493
1180			80	20	0.995493
1214	75	25			0.996473
1215	75	25			0.996473
1218	25	75			0.996473
1348	25	75			0.996473
1350	25			75	0.996473
1351		75		25	0.996473
1447	66		33		0.997452
1486		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain