SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4849

Length: 1315 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4849 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TGA-type basic leucine zipper protein TGA2.1 [Phaseolus vulgaris]	-	-	68%
FL-Next	sp=Transcription factor TGA2; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	bzip transcription factor	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	84%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	84%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	84%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	-
Sma3	DNA/RNA non-specific endonuclease, active site	IPR018524	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P43273

Fln msg: your sequence is shorter than subject: 268 - 330

Fln protein: AYVQQLETSRVKLSQLEQELERARQQGIYIGGSSGDHISSANGAANAGAAAFDLEYAHWVEEQNRQISDLRAALTAHVTDIELRILVEGGMAHYDALFRMKSVAAKADVFHLVSGMWKTPAERCFMWMGGFRPSELLKILKPQLEPLTEQQVMSVDNLQHSSQQAEDALSQGMEALQQSLAETLAAGSLGASNVANYMGHMAMAMGKLGMLENFVHQADNLRQQTLQQMSRILTTRQAARGLLAMGDYFSRLRALSSLWAARPREPA*

Protein Length: 269

Fln nts: GGCTTATGTTCAACAACTTGAAACAAGTCGTGTGAAGTTGAGCCAACTAGAACAAGAGCTGGAGCGAGCTAGGCAACAGGGAATTTATATTGGAGGAAGTTCTGGGGACCATATTTCATCTGCAAATGGAGCTGCTAATGCAGGGGCAGCTGCATTTGATCTGGAGTATGCACACTGGGTTGAAGAACAAAACCGACAAATTTCCGATCTGAGGGCTGCTTTGACAGCCCATGTAACAGATATTGAACTCCGTATTCTTGTTGAGGGTGGCATGGCTCATTATGATGCGCTTTTCCGTATGAAGAGTGTTGCTGCAAAAGCTGATGTTTTTCATCTTGTTTCTGGCATGTGGAAAACACCTGCTGAGCGTTGTTTTATGTGGATGGGAGGCTTTCGTCCATCAGAACTGTTAAAGATTCTTAAACCTCAACTTGAACCATTAACAGAGCAGCAGGTAATGTCAGTGGATAACTTGCAACATTCATCACAGCAGGCAGAGGATGCATTGTCACAAGGCATGGAGGCGCTTCAGCAGTCACTTGCAGAGACTTTGGCAGCAGGTTCACTGGGTGCATCGAATGTGGCTAATTATATGGGGCATATGGCAATGGCGATGGGCAAGCTAGGAATGCTCGAGAACTTTGTGCATCAGGCAGACAATCTACGCCAGCAGACGCTGCAGCAGATGTCTCGCATTCTTACAACTCGTCAAGCTGCAAGGGGTCTTCTTGCTATGGGGGATTATTTTAGCCGCCTTCGAGCGCTCAGTTCTCTCTGGGCAGCACGTCCTCGTGAGCCAGCGTAA___AGTTATGATTATCTTTAATTGTTATTCTTCAGCTGATTCAGCAAGTGATTTGAACCTGCTGAACTTGGTTTGAAGGACACATGCTTGGAAAAAGCCGATGGTATATTTTCCAAAGTACTTGCAGTTAAGACATGAAGAGATTGACCTGTAAGGGTGAGGAAGAAAGAAGATGCGACAGATATCTTTATAGTAACATATTCAGCAGAAATGTGCAGAAAGTGACTTGCTACTCTGAATTTCGAAGAGTTGCAACTCTGCTTCATTCAGTAATTTATTGTACACATGACCATCTGGACTTTACATGTAAAATTTAGGTGGCTGATTCAGTTTACAGGGGAGGTGCTGGTGGTCGGAATTGATAGAGAGCTGTGGATAGATTGACACTCTTCTCTAGGTTGTAACAGTAAGTTGATGATTATATGAATTATATGAGTGTAATTTCTTCAGAATTCTATGCATCGCAGCTATAATATAATTTATCATGGAAACAGATGGAACTATGAGTTATAA

Fln Alignment:

Contig4849___AYVQQLETSRVKLSXXXXXXXXXXXQGIYIGGSSGDHISSXXXXXXXXXXAFDLEYAHWVEEQNRQISDLRAALTAHVTDIELRILVEGGMAHYDALFRMKSVAAKADVFHLVSGMWKTPAERCFMWMGGFRPSELLKILKPQLEPLTEQQVMSVDNLQHSSQQAEDALSQGMEALQQSLAETLAAGSLGAS---NVANYMGHMAMAMGKLGMLENFVHQADNLRQQTLQQMSRILTTRQAARGLLAMGDYFSRLRALSSLWAARPRE
P43273______________AYVQQLENSRLKLTQLEQELQRARQQGVFISGT-GDQAHSTGGNGALA---FDAEHSRWLEEKNKQMNELRSALNAHAGDSELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPMTERQLMGINNLQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSSSSGNVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTLQQMIRVLTTRQSARALLAIHDYFSRLRALSSLWLARPRE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1064	66			33	1.0
1132			66	33	1.0
1156	16	83			0.994512
1157	83		16		0.994512
1161	16			83	0.994512
1166	83		16		0.994512
1170	85	14			0.993533
1172		14		85	0.993533
1174		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain