SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4807

Length: 1185 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4807

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative receptor protein kinase [Arabidopsis thaliana] gb\|ACN59306.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AEC09344.1\| putative receptor protein kinase [Arabidopsis thaliana]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at1g67720-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	78%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: your sequence is shorter than subject: 325 - 431

Fln protein: IGFGGYGPVYYGITKDGVEVAVKVLSTDFHQGKREFLNEVSLMSRIHHLRLPVSLFGYCQDQGTNILVYEYMHNGTLREHLHGPASQEKHLDWITRLKIAEDAAKGIEYLHAGCNPNIIHRDLKSSNILLDKEMRAKVSDFGLSRMAAEGTTHVSSLVRGTVGYLDPEYYVSQQFTEKSDVYSFGVVLLEMISGREAISDEGFGVNFRNIVQWARFHIDKGDIHSIIDPALGTNFNIQSVWKIAEKAMLCVQPYGKLRPTMSDVVKEIQEAINIENEYESADEELFETMSSQSRHSSIIPNHLDSAASDLSVTLDDSFFLPGVR*

Protein Length: 326

Fln nts: GATTGGATTCGGTGGCTATGGACCTGTGTACTATGGAATAACAAAAGATGGTGTGGAAGTTGCAGTTAAGGTTTTGTCAACCGATTTTCATCAAGGCAAACGAGAGTTTTTGAATGAAGTATCTCTGATGTCGAGAATACACCATCTGAGACTGCCAGTTTCTTTATTTGGATACTGCCAAGATCAAGGGACAAATATTCTTGTCTATGAATACATGCATAATGGAACTTTGCGAGAGCATCTCCATGGTCCTGCCAGTCAAGAAAAACATTTGGATTGGATCACTCGTCTCAAAATTGCTGAAGATGCGGCTAAAGGCATTGAATATCTTCATGCGGGATGCAATCCAAACATCATACACAGGGATTTGAAGAGCAGCAATATCCTCCTTGATAAGGAAATGAGGGCAAAAGTTTCTGATTTTGGGCTTTCAAGAATGGCAGCAGAAGGAACAACTCATGTATCAAGCTTAGTTCGTGGAACTGTTGGCTACTTGGATCCTGAGTACTATGTCTCTCAGCAGTTCACTGAAAAGAGTGATGTTTATAGTTTTGGAGTTGTCCTCCTGGAAATGATATCTGGTCGAGAAGCTATCTCTGATGAAGGTTTTGGTGTTAATTTCCGGAACATCGTGCAATGGGCAAGATTCCATATTGATAAAGGCGATATTCACAGTATCATAGATCCAGCTTTGGGAACTAATTTCAATATCCAGTCCGTGTGGAAAATTGCGGAGAAAGCTATGCTTTGTGTCCAACCATATGGAAAACTGCGACCAACAATGTCAGATGTGGTAAAGGAGATTCAAGAGGCAATCAACATTGAGAATGAATATGAATCCGCGGACGAAGAACTTTTTGAGACGATGTCAAGTCAGTCAAGACACTCATCAATTATCCCAAATCATCTTGATTCTGCTGCGTCTGATCTATCTGTCACTCTGGATGATTCATTTTTTCTTCCGGGTGTTAGATAG___TTGTTATTAGACTTAGAAGAGGACATCTTGCATTACTAGATCAAAAAGAAACTGGATGCCTGTCGTGTTCTTCTATTGGGTTTGTCTGGATTTTCAACTTTGTACATTTTGTCAGTCAAAGTATCCTTCATTCAGCTTTCTTTGATGTAAACTTCTTCAAACTAAGCACTTTGGATCACAGTTTAATGCTTATGTGCATGGATTATTAG

Fln Alignment:

Contig4807___IGFGGYGPVYYGITKD----------GVEVAVKVLSTDFHQGKREFLNEVSLMSRIHHLRLPVSLFGYCQDQGTNILVYEYMHNGTLREHLHGPASQEKHLDWITRLKIAEDAAKGIEYLHAGCNPNIIHRDLKSSNILLDKEMRAKVSDFGLSRMAAEG-TTHVSSLVRGTVGYLDPEYYVSQQFTEKSDVYSFGVVLLEMISGREAISDEGFGVNFRNIVQWAR-FHIDKGDIHSIIDPALGTNFNIQSVWKIAEKAMLCVQPYGKLRPTMSDVVKEIQEAINIENEYESADEELFETMSSQSRHSS
B8LKY1______________LGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGQLRHANL-VKLIGYCIEDNQRLLVYEYMPRGSLENHLFRKGALP--LPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSI-DKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLLSLKDTASSS----FNYQALQSQHQS

SNPs (tot: 5)

Position	A %	G %	T %	Probability
695	90	10		0.90298
696		10	90	0.90298
892	87	12		0.992554
896	87	12		0.992554
938	85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain