SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4779

Length: 2700 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene4779
ACCGGTAAAGATAATGGAGTTGATGTTTTAGGAGAGAGTGTTACATCTACCTTGAAGGATCAATCAAACAGTGGAGGGGACCTGTCTGTCAGTGAATCTCTCCTCAAGATGGAAGGCCACAAGAAAAGGATTGCCATTTTATTGGAAAGTTTTAGAAATTCACATTTTTTTGTCAGATTTGCTGGAGCAGATGAACCTCTTTGGGGTAAAAGAAACGTTACCAATCAGGGGTCAGTTTCTTCAGAATTGGCAGATGGGAAGGATGCAGTGGATGGACTCAGAAATGACAAAATTGTCAGAGAGGCATAAGTTCTTGTCTGCTATAATCGAAGGGGGAAAGTTTGATCCCAGTGTGGCGGGTGGAGTGGCAAGAAATGCAGTTACATGTTGCTCCTTTTTATTTTGAGTTTTTGTTGTGGTTTTGCAGGTCACAGTGGCAGCTGATATTACTCAAGATGCCATGCTTGAAGTTCTGCAGTTTGAGAATTACCAGACTAGCAGTTCAAGCCCAGCACTAAATGGAGGTGATAGATCTCAACTTCAACAAAATAATGCCAAGGATTCACAGGATCCATGCAAAGAACTTCTTCAGTGGTTGCTTCCTTTAGATCGACCTCTACCTCCTCCTGTTCCTGCTTTATCACCGTTGTCTTTAAGCTCTAGTTCATTTGTTGGAAACTCACCTCATAGGACATCTGTTTCTGGCACATCTACATCTTTTTTCTCAATTGGACACCATCGGAGCTACTCAATGAACTCACTTCCACAGGGTAACTCACCTTTGCCACCTACTCCTTCTCCCTCCAATACTAGTGCAAACTTTTCTCTAGAAGACTGGGATCGTTTGCCATCTCAGAAGTGTGTTAAAACAGAAGAAGTTGGAAGTGAGGGGCTGCTATCTTTTCGAGGTGCATCCTTAGAGCCACAAAGATTTTCTGTTCATTGTGGCTTGGAAGGCCTCTATGTCCCTGGCAAGAGATGGAGAAGAAAACTTGAGATAGTTCAACCTGTTGAAGTGGATTCTTATTTTGCTGATTGCAACTCGGTGGATCTCATCTGCGTCCTGATCAAGAATGTTATTCCAGCACATCTGCCAGATGTTGTTATTTTTGTGGATTCTGTAAGCATTATTTGTGAGGTAGCAGCTTCAGGAAGCCGACCTGTGTCTGTACCAATTGCCTGTATTGAGGCTGGAAATGATGATGCATTACCAGGTCTCGCACTCAGGAAAGGAGAACAACATTCTTTGATTCTAAAACCAACAACTTCGATGTGGAAAAGTTCATGTACTACTAAGGACAGAAACTCTTCTTCTGCGAAAGAAGGATGCAACTCACAGGCTCTTGGTAACTCGGCATTAACTGGGAACACATTTCCAAAAAGGATTGATGGGAAAAGGGACATTTTGGAGGGTGATCAGCAGGAGGCAAGTCAATATGCTATTTTAGTCTCTTGCAGATGTAGTCACACAGAATCTAGAATTTATTTCAAGCATTCGACCCAGTGGCAGCCTCGCACACCAAGAGACCTTTTGGTATCTGTTGAGTCTGAAATGTCAAAGCCTGCAGTTGGTCCTGATGGCACCATTTCTCAACTTTCAGCACAGGTTCTAACTCTTCAAGCAACAAACTTAACAGAGGATAATCTAAATTTGACTGTTCTTGCTCCAGCTTCTATGGCATCACTGCCATCTGTGGTATCTATGAACTCCACACCTTCTACCCCATGTATAAACTCATATATGAACTTTTCTGAAGGGAAGGGAAGAACAGGGATATTGGACATTGAGGATGGGAGTATAGCAGCCTTACCGAGATTGCACTCTATGTCTTTACCTTCAGTTAGGTCAATTGAAAATGTTACTGGAATGACACCTCTTACGCTGAAGGAGCAGAATATATCTGCTGCTGACATTATGGCAGATAGTAATTCAGCTTGTACACATCTATGGTTGCAAAGCACTGTTCCGCTTGGATGTGTGCCATCGCTCTCAACAAAGACAGTCAGGCTTGAGCTGCTTCCATTAACAGATGGTATAGTAACTCTTGACACTCTCCAGATTGCTGCGAAAGAGAGAGGTGTAATATATGTCCCAGAGAAGGCTTTGAAAATCTATTCAACCTCTAGCATTGCAAGTGGCATCGTTTGATGTAGATCTATTATATGTTTCATTTACTACATGGCATTATGAAGATGAGCTTCTGGGATTTAGTGTGGCTGTTATACACATGGTATTGCCGTCCATGCTCTGTACCATTATTTCAGCTTTCATCCCTGACAGTGAATTAACATTGAATTACTATTGTGTTAATTGGGTCTCCCTTTCGTTGACCTAGTTTGCTGCAGATACCCACTATCCCATTCTTTGAATGATATAATGTAAGTTATAAAGGTAAATATAACCATTGATTATGAGTAGAGTTTCTTTTAGTTTCTTTCATTACTTCTTTGACCATGTAATATTGCATCCACATCACTGGATGCAGCTCCTTTTGTGAGGAGAGTTGCTTTTGTAGATATAGAGCTTCTGTAGCCATTTACTGATGAGGGACGCTCAATTCAGTAATTTATATACACACACACCAAGGAGAAATACATCTAATATGCTTCTGAAGGATCCAATTGTGTACAGGTATTCATGAGTGAATGGTTTTTCCTGCTATGATTCAAATATAATTTCATCTCCACCAATTTGCAGAT

Ace file of the UniGene sp_v2.0_unigene4779

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	45%
Blast2go	uncharacterized protein	-	-	61%

Source	InterPros	Term	Type	Identity
Sma3	RNA-binding S4 domain	IPR002942	-	-
Sma3	Pseudouridine synthase, RsuA and RluB/C/D/E/F	IPR006145	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Pseudouridine synthase, RsuA and RluB/E/F, conserved site	IPR018496	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HJ55

Fln msg: Separated hits, possible frame ERROR between 282 and 314, your sequence is shorter than subject: 717 - 827

Fln protein: TGKDNGVDVLGESVTSTLKDQSNSGGDLSVSESLLKMEGHKKRIAILLESFRNSHFFVRFAGADEPLWGKRNVTNQGSVSSELADGKDAVDGLxxxxxxxxxxxxLSAIIEGGKFDPSVAGGVARNAVTCCSISCRAFVVVLQVTVAADITQDAMLEVLQFENYQTSSSSPALNGGDRSQLQQNNAKDSQDPCKELLQWLLPLDRPLPPPVPALSPLSLSSSSFVGNSPHRTSVSGTSTSFFSIGHHRSYSMNSLPQGNSPLPPTPSPSNTSANFSLEDWDRLPSQKCVKTEEVGSEGLLSFRGASLEPQRFSVHCGLEGLYVPGKRWRRKLEIVQPVEVDSYFADCNSVDLICVLIKNVIPAHLPDVVIFVDSVSIICEVAASGSRPVSVPIACIEAGNDDALPGLALRKGEQHSLILKPTTSMWKSSCTTKDRNSSSAKEGCNSQALGNSALTGNTFPKRIDGKRDILEGDQQEASQYAILVSCRCSHTESRIYFKHSTQWQPRTPRDLLVSVESEMSKPAVGPDGTISQLSAQVLTLQATNLTEDNLNLTVLAPASMASLPSVVSMNSTPSTPCINSYMNFSEGKGRTGILDIEDGSIAALPRLHSMSLPSVRSIENVTGMTPLTLKEQNISAADIMADSNSACTHLWLQSTVPLGCVPSLSTKTVRLELLPLTDGIVTLDTLQIAAKERGVIYVPEKALKIYSTSSIASGIV*

Protein Length: 718

Fln nts: ACCGGTAAAGATAATGGAGTTGATGTTTTAGGAGAGAGTGTTACATCTACCTTGAAGGATCAATCAAACAGTGGAGGGGACCTGTCTGTCAGTGAATCTCTCCTCAAGATGGAAGGCCACAAGAAAAGGATTGCCATTTTATTGGAAAGTTTTAGAAATTCACATTTTTTTGTCAGATTTGCTGGAGCAGATGAACCTCTTTGGGGTAAAAGAAACGTTACCAATCAGGGGTCAGTTTCTTCAGAATTGGCAGATGGGAAGGATGCAGTGGATGGACTCAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTGTCTGCTATAATCGAAGGGGGAAAGTTTGATCCCAGTGTGGCGGGTGGAGTGGCAAGAAATGCAGTTACATGTTGCTCCaTTTcAtgTaGAGcTtTTGTgGTGGTTTTGCAGGTCACAGTGGCAGCTGATATTACTCAAGATGCCATGCTTGAAGTTCTGCAGTTTGAGAATTACCAGACTAGCAGTTCAAGCCCAGCACTAAATGGAGGTGATAGATCTCAACTTCAACAAAATAATGCCAAGGATTCACAGGATCCATGCAAAGAACTTCTTCAGTGGTTGCTTCCTTTAGATCGACCTCTACCTCCTCCTGTTCCTGCTTTATCACCGTTGTCTTTAAGCTCTAGTTCATTTGTTGGAAACTCACCTCATAGGACATCTGTTTCTGGCACATCTACATCTTTTTTCTCAATTGGACACCATCGGAGCTACTCAATGAACTCACTTCCACAGGGTAACTCACCTTTGCCACCTACTCCTTCTCCCTCCAATACTAGTGCAAACTTTTCTCTAGAAGACTGGGATCGTTTGCCATCTCAGAAGTGTGTTAAAACAGAAGAAGTTGGAAGTGAGGGGCTGCTATCTTTTCGAGGTGCATCCTTAGAGCCACAAAGATTTTCTGTTCATTGTGGCTTGGAAGGCCTCTATGTCCCTGGCAAGAGATGGAGAAGAAAACTTGAGATAGTTCAACCTGTTGAAGTGGATTCTTATTTTGCTGATTGCAACTCGGTGGATCTCATCTGCGTCCTGATCAAGAATGTTATTCCAGCACATCTGCCAGATGTTGTTATTTTTGTGGATTCTGTAAGCATTATTTGTGAGGTAGCAGCTTCAGGAAGCCGACCTGTGTCTGTACCAATTGCCTGTATTGAGGCTGGAAATGATGATGCATTACCAGGTCTCGCACTCAGGAAAGGAGAACAACATTCTTTGATTCTAAAACCAACAACTTCGATGTGGAAAAGTTCATGTACTACTAAGGACAGAAACTCTTCTTCTGCGAAAGAAGGATGCAACTCACAGGCTCTTGGTAACTCGGCATTAACTGGGAACACATTTCCAAAAAGGATTGATGGGAAAAGGGACATTTTGGAGGGTGATCAGCAGGAGGCAAGTCAATATGCTATTTTAGTCTCTTGCAGATGTAGTCACACAGAATCTAGAATTTATTTCAAGCATTCGACCCAGTGGCAGCCTCGCACACCAAGAGACCTTTTGGTATCTGTTGAGTCTGAAATGTCAAAGCCTGCAGTTGGTCCTGATGGCACCATTTCTCAACTTTCAGCACAGGTTCTAACTCTTCAAGCAACAAACTTAACAGAGGATAATCTAAATTTGACTGTTCTTGCTCCAGCTTCTATGGCATCACTGCCATCTGTGGTATCTATGAACTCCACACCTTCTACCCCATGTATAAACTCATATATGAACTTTTCTGAAGGGAAGGGAAGAACAGGGATATTGGACATTGAGGATGGGAGTATAGCAGCCTTACCGAGATTGCACTCTATGTCTTTACCTTCAGTTAGGTCAATTGAAAATGTTACTGGAATGACACCTCTTACGCTGAAGGAGCAGAATATATCTGCTGCTGACATTATGGCAGATAGTAATTCAGCTTGTACACATCTATGGTTGCAAAGCACTGTTCCGCTTGGATGTGTGCCATCGCTCTCAACAAAGACAGTCAGGCTTGAGCTGCTTCCATTAACAGATGGTATAGTAACTCTTGACACTCTCCAGATTGCTGCGAAAGAGAGAGGTGTAATATATGTCCCAGAGAAGGCTTTGAAAATCTATTCAACCTCTAGCATTGCAAGTGGCATCGTTTGATGTAGATCTATTATATGTTTCATTTACTACATGGCATTATGAAGATGAGCTTCTGGGATTTAGTGTGGCTGTTATACACATGGTATTGCCGTCCATGCTCTGTACCATTATTTCAGCTTTCATCCCTGACAGTGAATTAACATTGAATTACTATTGTGTTAATTGGGTCTCCCTTTCGTTGACCTAGTTTGCTGCAGATACCCACTATCCCATTCTTTGAATGATATAATGTAAGTTATAAAGGTAAATATAACCATTGATTATGAGTAGAGTTTCTTTTAGTTTCTTTCATTACTTCTTTGACCATGTAATATTGCATCCACATCACTGGATGCAGCTCCTTTTGTGAGGAGAGTTGCTTTTGTAGATATAGAGCTTCTGTAGCCATTTACTGATGAGGGACGCTCAATTCAGTAATTTATATACACACACACCAAGGAGAAATACATCTAATATGCTTCTGAAGGATCCAATTGTGTACAGGTATTCATGAGTGAATGGTTTTTCCTGCTATGATTCAAATATAATTTCATCTCCACCAATTTGCAGAT

Fln Alignment:

Contig4779___LKDQSNSGGDLSVSESLLKMEGHKKRIAILLESFRNSHFFVRFAGADEPLWGKRNVTNQGSVSSELADGKDAVDGLRxxxxxxxxxxxLSAIIEGGKFDPSVAGGVARNAVTCCSISCRAFVVVLQVTVAADITQDAMLEVLQFENYQTSSSSPALNGGDRSQLQQNNAKDSQDPCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGNSPHRXXXXXXXXXXXXIGHHRSYSMNSLPQGXXXXXXXXXXXXXXANFSLEDWDRLPSQKCVKTEEVGSEGLLSFRGASLEPQRFSVHCGLEGLYVPGKRWRRKLEIVQPVEVDSYFADCNSVDLICVLIKNVIPAHLPXXXXXXXXXXXXCEVAASGSRPVSVPIACIEAGNDDALPGLALRKGEQHSLILKPTTSMWKSSCTTKDRNSSSAKEGCNSQALGNSALTGNTFPKRIDGKRDILEGDQQEASQYAILVSCRCSHTESRIYFKHSTQWQPRTPRDLLVSVESEMSKPAVGPDGTISQLSAQVLTLQATNLTEDNLNLTVLAPASMASLPSVVSMNSTPSTPCINSYMNFSEGKGRTGILDIEDGSIAALPRLHSMSLPSVRSIEN-VTGMTPLTLKEQNISAADIMADSNSACTHLWLQSTVPLGCVPSLSTKTVRLELLPLTDGIVTLDTLQIAAKERGVIYVPEKALKIYSTSSIASGIV
F6HJ55______________LKEKLDSQKDISASESLLRMEDHKRQTEILLQKFKSSHFFVRIAESGEPLWSKKGASETSLQFSGVAAPKSTVTKTRxxxxxxxxxxxLSAVIDRGNFNASVSGGVARNIVDCCSLSNGDVVVLLQVNVAVDFLKDPVLEILQFEKFNNRKFS--------SENQDSLVHANQDPCGDLLKWLLPLDNTLPPPTCALSPPLSSGSG-IGNTSQRSTPASSGSQLFSFGHFRSYSMSALPQNTTSAPPPIANPSTKPNFELEDWDRFSPQKFVKSEKTGSEELLSFRGVSLEPERFSVCCGLEGIYIPGRRWRRKLEIIQPVEIHSFAADCNTDDLLCVQIKNVSPAHIPDIVVYLDAITVVFEEASVGGSPRSLPMACIEAGNDHCLPNLALRRGEEHSFILKPATSTWKLLMAPGQSSQSA------HLPAGNAA---------IEGKRSTLTSD-----QYAVLVSCRCNYTESRLFFKQPTSWRPRISRDLMISVASEMSRQPLGSNGRVSEFPVQVLTLQASNLTPEDLTLTVLAPASFTSPPSLMTLNSAPSSP-MSPCLGFSEFCGKIG----GERQATALPRLSSAPVPLENQKANGDTGALSVSSNEKAVPISDVIPNTGLGCTHLWLQSRVPLGSVPSQSTATIKLELLPLTDGIITLDTLQIDVKEKGHTYIPEHSLKINATSSISTGIV

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
1046		85		14	0.993533
1394	33		33		0.997753
1627		25		75	0.996473
1697	16	83			0.994512
1841		16		83	0.994512
1871	33		66		1.0
1911		10		90	0.90298
1981	14		85		0.993533
2147	87	12			0.992554
2150		12	87		0.992554
2152		87		12	0.992554
2153	87		12		0.992554
2154	12			87	0.992554
2156		10	90		0.90298
2158			10	90	0.90298
2159			10	90	0.90298
2161	90	10			0.90298
2162		10		90	0.90298
2163		10	90		0.90298
2165	90			10	0.90298
2166			90	10	0.90298
2168			10	90	0.90298
2171	88		11		0.923564
2173		11		88	0.923564
2197	81		18		0.999994
2199		18		81	0.999994
2200	81		18		0.999994
2204	77	22			0.999999
2205		22	77		0.999999
2206	77			22	0.999999
2215		22		77	0.999999
2216			77	22	0.999999
2217		22	77		0.999999
2218	22		77		0.999999
2238		83	5	11	0.999887
2247		11		88	0.999937
2266	16	83			1.0
2425		16		83	0.999991
2594	57	42			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain