SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4351

Length: 1773 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4351

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cc-nbs-lrr resistance protein n=1 Tax=Populus trichocarpa RepID=B9GF31_POPTR	-	-	7.0e-34	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	cc-nbs-lrr resistance protein	-	-	0.0	47%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	47%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	47%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR16

Fln msg: your sequence is shorter than subject: 566 - 966

Fln protein: DLSDSHLQKCFLSCAAFLGDKEIPVETLVQMWDAEGLLDGAETPYLMDSGRHCIKVLVSRFLLESVEYIVDDDYHTVEYLKIHEALREMAIYIGSQDQEKCLFLAGQKLQNFPGERDTRDCRRISVAHTAIKDLPNDLKCSKLESLVLASNNQLKEIPERFFSDIKSLKVLDLSCTSIGTLPGTVQQLQQLKFLNLARCTKLVDLPDSLCTLSNLQVLNLSSCLALRSLPSQIGKLKNLKHLKLDACYSLNELPKDLFQLTSLNTLILPLMESVCAVSVEDLSKLSNLTELTTVVTSENKVDTEVAWLEMRNLTLEYDADADAERDCVAPEHVILQKMGHMKKLQNFHLINYQGETLPNSICEFQNMKMLLLHSCYQLKALPALDKNRSESADEGSDSAGNSFPILEILVLRNLLKLESLAGSSEIWNEGTMSKLQFLVIINCPLKKLSSGMKLPYLKELHISMCNELMELDIGSDGFPMLEMLSLDELNKLERIADPATEWNEGTMSKLQILEVIDCPLLKTLPKGIEKLSNLKQINGELDWWQRISWPDGKLEIGLGTLFMIV*

Protein Length: 567

Fln nts: TGATCTGTCTGATTCCCATCTACAGAAATGTTTTCTAAGTTGTGCAGCATTTCTTGGAGATAAAGAAATTCCTGTGGAGACGCTGGTGCAAATGTGGGATGCTGAAGGGTTACTCGACGGGGCAGAGACGCCTTATTTGATGGATTCTGGGCGGCATTGCATAAAAGTACTGGTAAGTAGGTTCTTGCTGGAGTCTGTGGAGTATATTGTTGATGACGACTATCATACAGTGGAGTATTTAAAGATTCATGAAGCTCTCCGTGAAATGGCGATTTACATAGGCAGCCAAGACCAAGAGAAATGCTTATTTTTAGCAGGTCAAAAGTTGCAAAACTTTCCTGGTGAAAGAGATACGAGGGATTGCAGACGCATATCGGTTGCCCATACTGCTATTAAGGATCTTCCAAATGATTTGAAATGTTCAAAGCTTGAGAGTTTGGTATTAGCCTCTAATAACCAGTTGAAAGAGATTCCAGAAAGATTTTTCTCAGACATCAAGTCTCTGAAGGTTTTGGATTTGTCGTGCACATCCATAGGAACATTGCCAGGTACAGTGCAGCAACTTCAGCAGCTTAAGTTTCTTAACTTGGCCAGGTGCACCAAACTTGTTGATTTGCCTGACAGTCTCTGCACTCTCTCTAACCTTCAAGTTTTGAATCTTAGTTCTTGTTTGGCATTGCGTTCATTGCCCAGTCAGATAGGAAAGCTCAAGAATCTAAAGCATCTCAAATTGGATGCATGCTACAGTCTAAATGAGCTTCCAAAAGATCTTTTTCAACTCACTTCATTGAACACTCTCATCTTGCCATTAATGGAGTCTGTTTGTGCAGTGAGTGTGGAGGATCTTTCAAAGCTCTCCAATCTAACAGAGTTGACGACAGTGGTAACATCAGAAAATAAAGTGGATACAGAGGTTGCTTGGTTGGAGATGAGAAATTTAACATTAGAATATGATGCAGATGCAGATGCAGAAAGAGATTGTGTAGCACCTGAGCATGTTATTCTCCAAAAGATGGGACATATGAAGAAGTTGCAGAATTTTCATCTGATTAATTATCAGGGGGAAACTCTACCCAATAGTATTTGTGAATTCCAAAATATGAAGATGTTGCTTTTGCACTCATGTTACCAATTGAAGGCGCTCCCTGCCTTGGACAAGAATAGGAGTGAAAGTGCAGATGAGGGGAGTGACAGTGCAGGTAATTCTTTTCCAATATTAGAAATATTAGTTCTGAGAAACTTACTTAAATTGGAAAGTCTTGCAGGGTCATCTGAGATCTGGAATGAGGGGACAATGTCTAAACTTCAATTCTTGGTGATAATCAATTGCCCATTGAAGAAATTATCATCAGGAATGAAGCTACCTTATTTAAAAGAATTGCATATCAGTATGTGCAATGAATTGATGGAATTGGACATTGGGAGTGATGGTTTTCCAATGTTGGAGATGCTATCATTGGATGAACTAAACAAGTTAGAGAGGATAGCAGATCCTGCCACTGAGTGGAATGAAGGAACAATGTCCAAGCTTCAAATCTTGGAAGTTATTGATTGCCCTTTGTTGAAGACATTACCAAAGGGAATAGAGAAATTATCTAACTTGAAACAAATTAATGGGGAATTAGATTGGTGGCAGAGGATCAGTTGGCCGGATGGTAAACTGGAAATAGGTCTGGGTACATTATTTATGATAGTATAG___AAATTAATGTTTTTGTTGTATTATATATTGAAATTTTGTTATACTATTAATATTTTTTTGTTATCCTATATTGA

Fln Alignment:

Contig4351___DLSDSHLQKCFLSCAAFLGDKEIPVETLVQMWDAEGLLDGAETPYLMDSGRHCIKVLVSRFLLESVEYIVDDDYHTVEYLKIHEALREMAIYIGSQDQEKCLFLAGQKLQNFPGERDTRDCRRISVAHTAIKDLPNDLKCSKLESLVLASNNQLKEIPERFFSDIKSLKVLDLSCTSIGTLPGTVQQLQQLKFLNLARCTKLVDLPDSLCTLSNLQVLNLSSCLALRSLPSQIGKLKNLKHLKLDACYSLNELPKDLFQLTSLNTLILPLMESVCAVSVEDLSKLSNLTELTTVVTSENKVDTEVAWLEMRNLTLEYDADADAERDCVAPEHVILQKMGHMKKLQNFHLINYQGETLPNSICEFQNMKMLLLHSCYQLKALPALDKNRSESADEGSDSAGNSFPILEILVLRNLLKLESLAGSSEIWNEGTMSKLQFLVIINCPL--KKLSSGMKLPYLKELHISMCNELMELDIGSDGFPMLEMLSLDELNKLERIADPATEWNEGTMSKLQILEVIDCPLLKTLPKGIEKLSNLKQINGELDWWQRISWPD
B8LR16______________DLSDRNLQICFLYCASFPEDASIRVEDLVHLWSAEGLITQRGTTYLMDIGREYIDLLVSRCLVQYADW----PGFKQQSLRVHDVLRDMAIYVG-QREENWLFAAGQHLQDFPSQEQTLDCKRISIFGNDIHDLPMNFRCPKLVSLVLSCNENLTEVPEGFLSNLASLRVLDLSKTSISSLPTSLGQLGQLELLDLSGCTSLKDLPESICNLHGLQFLDLGHCYELQSLPSMIGQLKNLKHLSLLFCNCLMAIPHDIFQLTSLNQLILPRQSSCYA---EDLTKLSNLRELDVTIKPQSKVGTMGPWLDMRDLSLTYNNDADTIRD-DADENILSESIKDMKKLESLYLMNYQGVNLPNSIGEFQNLRSLCLTACDQLKEFP-----KFPTLEIGSESTHGIFLMLENMELRDLAKLESIISLSNMWNEGIMFKLESLHIENCFFADKLLFGVEKLSNLTRLIIGSCNELMKLDLSSGGFPMLTYLDLYSLTKLESMTGPFGTWNEETLPKLQVLNITDCPLLRRLPLGMEKLLCLKIIRGELAWWDQIIWED

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
545	11		88		0.923564
550	11		88		0.923564
551		11		88	0.923564
552	88			11	0.923564
556		11		88	0.923564
560	12		87		0.992554
562	87		12		0.992554
570	12	87			0.992554
592		85	14		0.993533
607		14		85	0.993533
617			85	14	0.993533
626		14		85	0.993533
629		85		14	0.993533
632	14	85			0.993533
638	14	85			0.993533
664		14	85		0.993533
671		14		85	0.993533
675			85	14	0.993533
694	14		85		0.993533
696	14	85			0.993533
698	14		85		0.993533
711	85		14		0.993533
775		14		85	0.993533
777	14	85			0.993533
835	20		80		0.995493
857	20	80			0.995493
862	80			20	0.995493
1173	83			16	0.994512
1175			16	83	0.994512
1254		16	83		0.994512
1258	16		83		0.994512
1270		83		16	0.994512
1295	87	12			0.992554
1367			11	88	0.923564
1369	88	11			0.923564
1370		28	14	57	1.0
1372			14	85	0.993533
1374	85	14			0.993533
1375	71		14	14	0.984337
1376	85			14	0.993533
1378	85		14		0.993533
1379	85	14			0.993533
1381			14	85	0.993533
1382			85	14	0.993533
1386	85	14			0.993533
1390			85	14	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
953	972	GATGCA GATGCA GATGCA GA	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain