SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4282

Length: 537 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene4282
CGTCGTGACCTTGGCTGTCACTATGGTCAAGGTCTTCCAGGCCCTCCGATGGGAGGTCCACCGGGAGGGATGATGCATCCTCAAGGAATGATGGGTCAGGGATTTGATCCTACTTGTCGTGACCTATGGGTAGTCGGTGGTGGTTATGGAGGGTTTTCTTCTCATGGTCCTACTTTTCATGGGTTGATGCCGTCCTTCCCTCCTGTTGGAACAGTAGGCCTACCTGGAGTGGCTCCTCATGTCAATCCAGCTTTTTTTGGCAGGGGAGTGACTGCAAACGGCATGGCAATGATGCCGAGTGGAGGCATGGAGGGACACCAGACAGGAATGTGGGCAGACTCTGGCATGGGTGGATGGGGCGGAGAGGAGCATAATCGGAGAATGAGAGAATCAAGTTATGGAGATGATATGGGATCAGATTATGGATACAACGATATGAATCATGAAAGAGGGGGCAGGTCGAGTGCCTCTCGGGATAAAGAGAGGGGAACAGAAAGGGATTGGGGTGGATCTTCTGATAGGAGACGTCGCGATGAT

Ace file of the UniGene sp_v2.0_unigene4282

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to RNA recognition motif (RRM)-containing protein n=1 Tax=Vitis vinifera RepID=UPI000198579B	-	-	3.0e-34	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	68%
Blast2go	rna binding	-	-	2.8026e-45	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	2.8026e-45	66%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015465	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GVJ6

Fln msg: Distance to subject end: 76 aas, your sequence is shorter than subject: 179 - 647

Fln protein: RRDLGCHYGQGLPGPPMGGPPGGMMHPQGMMGQGFDPTCRDLWVVGGGYGGFSSHGPTFHGLMPSFPPVGTVGLPGVAPHVNPAFFGRGVTANGMAMMPSGGMEGHQTGMWADSGMGGWGGEEHNRRMRESSYGDDMGSDYGYNDMNHERGGRSSASRDKERGTERDWGGSSDRRRRDD

Protein Length: 180

Fln nts: CGTCGTGACCTTGGCTGTCACTATGGTCAAGGTCTTCCAGGCCCTCCGATGGGAGGTCCACCGGGAGGGATGATGCATCCTCAAGGAATGATGGGTCAGGGATTTGATCCTACTTGTCGTGACCTATGGGTAGTCGGTGGTGGTTATGGAGGGTTTTCTTCTCATGGTCCTACTTTTCATGGGTTGATGCCGTCCTTCCCTCCTGTTGGAACAGTAGGCCTACCTGGAGTGGCTCCTCATGTCAATCCAGCTTTTTTTGGCAGGGGAGTGACTGCAAACGGCATGGCAATGATGCCGAGTGGAGGCATGGAGGGACACCAGACAGGAATGTGGGCAGACTCTGGCATGGGTGGATGGGGCGGAGAGGAGCATAATCGGAGAATGAGAGAATCAAGTTATGGAGATGATATGGGATCAGATTATGGATACAACGATATGAATCATGAAAGAGGGGGCAGGTCGAGTGCCTCTCGGGATAAAGAGAGGGGAACAGAAAGGGATTGGGGTGGATCTTCTGATAGGAGACGTCGCGATGAT

Fln Alignment:

Contig4282___GPTFHGLMPSFPPVGTVGLPGVAPHVNPAFFGRGVTANGMAMMPSGGMEGHQTGMWADSGMGGWGGEEHNRRMRESSY-GDDMGSDYGYNDMNHERGGRS-SASRDKERGTE
F6GVJ6______________GSAFPGMVPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGATGMDGHHAGMWTDTSMGGWGGEEHGRRTRESSYGGDDGASDYGYGEVNHEKVGRSNTASREKERGSE

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
74			20	80	0.995493
100		16	83		0.994512
102	83			16	0.994512
103		16		83	0.994512
104			16	83	0.994512
108		16		83	0.994512
110		83		16	0.994512
112	83		16		0.994512
113		83	16		0.994512
114		16		83	0.994512
115		25		75	1.0
116	50		50		1.0
118		50	50		1.0
119	12		87		0.992554
120		12	50	37	1.0
121			87	12	0.992554
125	55	33	11		1.0
127	66		11		0.999999
131		11	88		0.923564
132		33	66		1.0
135	66		11	11	0.944822
136			88	11	0.923564
137		11	66	22	0.999999
139	11	11	66	11	0.944822
141	11	11	77		0.968132
142		11		88	0.923564
144	11	11	66	11	0.944822
145	11	22	66		0.999999
146	11			88	0.923564
147		11	88		0.923564
148	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain