SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4137

Length: 1039 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4137

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ankyrin-like protein [Arabidopsis thaliana] dbj\|BAF01149.1\| ankyrin like protein [Arabidopsis thaliana]	-	-	3.0e-40	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Blast2go	ankyrin repeat-containing	-	-	0.0	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	69%
Blast2go	negative regulation of catalytic activity	GO:0043086	Biological Process	69%
Blast2go	identical protein binding	GO:0042802	Molecular Function	69%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	69%
Blast2go	mitochondrion	GO:0005739	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Ankyrin repeat	IPR002110	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
510		11	88		0.923564
513	88	11			0.923564
514	88		11		0.923564
518	88	11			0.923564
519			88	11	0.923564
520	88			11	0.923564
521			11	88	0.923564
522	88	11			0.923564
523	88			11	0.923564
524	88		11		0.923564
525		88		11	0.923564
528			88	11	0.923564
530	11		88		0.923564
555		11	88		0.923564
605	11		88		0.923564
677			11	88	0.923564
680	88		11		0.923564
836	75		12	12	0.975346
838	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain