SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3834

Length: 1171 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3834

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 n=1 Tax=Petunia x hybrida RepID=Q9MBF5_PETHY	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	cytochrome p450	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on paired donors, with incorporation or reduction of molecular oxygen, With NADH or NADPH as one donor, and incorporation of one atom of oxygen.	EC:1.14.13.-	-	0.0	65%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	65%
Blast2go	Histidine metabolism	00340	65%
Blast2go	Phenylalanine metabolism	00360	65%
Blast2go	Chlorocyclohexane and chlorobenzene degradation	00361	65%
Blast2go	Bisphenol degradation	00363	65%
Blast2go	Tryptophan metabolism	00380	65%
Blast2go	Cyanoamino acid metabolism	00460	65%
Blast2go	Xylene degradation	00622	65%
Blast2go	Toluene degradation	00623	65%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	65%
Blast2go	Chloroalkane and chloroalkene degradation	00625	65%
Blast2go	Naphthalene degradation	00626	65%
Blast2go	Aminobenzoate degradation	00627	65%
Blast2go	Styrene degradation	00643	65%
Blast2go	Limonene and pinene degradation	00903	65%
Blast2go	Diterpenoid biosynthesis	00904	65%
Blast2go	Brassinosteroid biosynthesis	00905	65%
Blast2go	Carotenoid biosynthesis	00906	65%
Blast2go	Phenylpropanoid biosynthesis	00940	65%
Blast2go	Flavonoid biosynthesis	00941	65%
Blast2go	Isoflavonoid biosynthesis	00943	65%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	65%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	65%
Blast2go	Glucosinolate biosynthesis	00966	65%
Blast2go	Biosynthesis of type II polyketide products	01057	65%
Blast2go	Biosynthesis of phenylpropanoids	01061	65%
Blast2go	Biosynthesis of terpenoids and steroids	01062	65%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	65%
Blast2go	Biosynthesis of plant hormones	01070	65%
Blast2go	Metabolic pathways	01100	65%
Blast2go	Biosynthesis of secondary metabolites	01110	65%

Source	GOs	Term	Type	Identity
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	65%
Blast2go	medium-chain fatty acid biosynthetic process	GO:0051792	Biological Process	65%
Blast2go	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	GO:0016709	Molecular Function	65%
Blast2go	metal ion binding	GO:0046872	Molecular Function	65%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRX6

Fln msg: your sequence is shorter than subject: 309 - 512

Fln protein: MGNIGDYLPFLRPLDLQGQEKRMHEIMQWVDELYDRVIEEQRLVLKEGSGTGPVNFVHTLLEAEDRDKSLDMTKIKAILIDMVAAGTDTSSVTSEWTMAELLRHPEYMAKVQQEINQVVGQDRLVEESDLGNLRVLRAVVKEVFRLHPVGGFLIPHISMEETKVGGYDIPKNTRILINTYALGRNPAVWSNPNTFQPERFLPVNNDNNDQNVDFNDPDCKIVPFGAGRRGCPGASLGMSVVLLGLARLLQLFNWSPPSKERLDDDDMVEAFGYTLKGVPLEAIAKPRLESLLSLCQERQDQHDHELLN*

Protein Length: 310

Fln nts: ATGGGCAACATTGGAGATTATCTTCCCTTCTTGAGGCCTCTGGATCTGCAGGGTCAAGAAAAGCGAATGCATGAAATAATGCAATGGGTTGATGAATTGTATGATCGAGTCATCGAAGAGCAACGTCTTGTACTTAAGGAAGGCAGTGGAACAGGACCTGTAAACTTTGTTCACACACTGCTTGAAGCAGAAGACCGAGATAAGAGCTTGGACATGACAAAGATCAAAGCCATTCTCATAGATATGGTTGCTGCAGGAACAGACACTTCCTCTGTAACCAGTGAGTGGACAATGGCCGAGCTATTGAGGCACCCAGAATACATGGCCAAAGTGCAGCAAGAGATTAACCAAGTTGTCGGGCAGGATCGACTTGTGGAGGAGTCTGATTTGGGGAATTTAAGAGTATTAAGGGCTGTTGTTAAGGAAGTATTCAGGTTGCATCCAGTGGGTGGCTTCCTCATTCCTCACATTTCCATGGAGGAAACAAAGGTAGGAGGCTATGACATACCCAAGAACACCAGGATTCTCATCAACACATATGCGTTGGGGAGGAACCCTGCAGTGTGGTCCAATCCCAACACTTTCCAACCAGAAAGGTTCCTCCCGGTGAATAATGATAACAATGATCAAAATGTGGATTTCAATGACCCAGATTGCAAAATTGTTCCATTTGGAGCAGGAAGAAGAGGCTGCCCTGGGGCTTCCCTTGGAATGAGTGTGGTCTTACTTGGTTTGGCTCGGCTGCTTCAGCTCTTCAACTGGTCTCCACCTTCCAAAGAAAGACTGGACGATGATGACATGGTGGAAGCATTTGGATATACTCTGAAAGGTGTACCCCTTGAAGCCATTGCTAAACCCAGGCTTGAATCATTATTGTCATTGTGCCAAGAGAGACAAGACCAACATGACCATGAGCTCTTGAATTGA___AATCTTAGGGCTATTTTCAAGCCCTGGACAGTCCATTTGAAGACCAAGGGAGGGCTTTGTCACCCCTATGCGGGCAAGAGGAAAGATCAATTGGTATCCCTTCCTACAAGCCAAATAAAACCATAACCAAAATATAAGTTTTAGGAATTTTTTGAGAATAGTACAGGATGTGGAGATTATTTCTGGTTCATAATAAAAGGTTGAATTAGTAGTTGAAAAAGAAATAACAACCTTAAGCTAATGA

Fln Alignment:

Contig3834___NIGDYLPFLRPLDLQGQEKRMHEIMQWVDELYDRVIEEQRLVLKEGSGTGPVNFVHTLLEAEDRDKSLDMTKIKAILIDMVAAGTDTSSVTSEWTMAELLRHPEYMAKVQQEINQVVGQDRLVEESDLGNLRVLRAVVKEVFRLHPVGGFLIPHISMEETKVGGYDIPKNTRILINTYALGRNPAVWSNPNTFQPERFLPVXXXXXXXXXXXXXXXCKIVPFGAGRRGCPGASLGMSVVXXXXXXXXXXFNWSPPSKERLDDDDMVEAF-GYTL-KGVPLEAIAKPRL
B8LRX6______________NIGDYIPYLAWLDLQGLKRRFKKIHKTVDHFFDNVIEEHIARNDPNATPDLVDVLLAICADKDTEFQIKRKHIKGVIADMFAAGTDTSSIGIEWAMSEVLRNPPVLKKLQDELERVVGMGRMVQESDLPSLVYLQAVVKEALRLHPPGPLAIPHLSVEDCTVLGYEIPRGTCVLLNLWAIGRNPKSWEDAESFEPERFIEA----TGSELDAKVQNLEWIPFGAGRRGCPGQQLGMIVVEFGMAQLLHCFNWKLPDEINGQELDMVERFNGLTLPRAHELLAVPTPRL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
347		14		85	0.993533
600			87	12	0.992554
601		12		87	0.992554
602	12			87	0.992554
605	12			87	0.992554
815			10	90	0.90298
816			10	90	0.90298
987		42		57	1.0
1035	20			80	0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain