SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3745

Length: 2202 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene3745
ATGGGGATCCAGGAGCTTGTGTGGCCTCCAGCAGCAGCATGAGCCCTGAAGATCCGAGCACAGGAACGATTTATCCAGAACACAAATATTCCAGCTTCTCTTCTTCTGCTGCAGCACCAGGGGGAATGGATGCAGGGAAGGATGGCGATCCCAGCCCGCAATCCCCGGGCTGTTCCGTCCGGACCCTGGAACTATCGAATTCTGGGAAACAAATCGGAGAGGGATCGAGGAAACAGTATGTGAAGCAGGTGACGGGCAGGTACAATGATACTGAACTGCACCTCGCTGTCAAGAAGGGGGATTTGGAGCGTGTGAAGGAGATTCTCAGTGGGCTTGATGATCCGCAGAGTCTGGTGAGTGAAGAGAATGATATGGGGGAAACTCCTCTATATGTGGCTGCAGAACAGGGGCACTTGGAGGTGTTGCAGGAGCTTCTGAAATCGGCCCGTCAGGATACAGTGGTCAAGAAAAATCAGTCTGGTCTTGATGCTTTCCATACAGCTGCCAAGCAGGGGCATTTAGGCATTGTGAAGGAGTTACTGAAATATCAGCGGGATCTATATATGACTAATGATTTAGCATGTTGCACCCCTCTTATTTCTGCTGCAACTAAGGGGCATGCTGAGGTGGTTAAAGAACTTTTAGCTACTGATCGCCAATTGATAGATATTTCCAAAAACAACGGAAAGAATGCTCTTCATCTGGCTGCAAGAGCTGGTTATGTAGATATAGTAAAAGCCTTTCTGGATATGGATCAACAAATGGCCCGAAGAACAGACAAAAAAGGGCAGACAGCTCTACACATGGCTGCAAAAGGGGCATTTTGCTTGGAAGTAGTGAAATTGCTCCTAAAGGTGGATCCAGCAATGGTTATGTTGCCTGACAAGAATGGAAATACAGCTTTGCATGTTGCTACAAGGAAAAAGAGGGCACAGATTGTGAATGAGTTACTATCATTGCCAGACATCAATGTTAATGCACTGAATAGGTTACACAAGACAGCTTTGGATCTCGCAGAAGAGCTACCGAGCTCAGGAGAGGCATCTGAAATCAAGGAAGCTTTGATTGAAGCTAATGCAGTTAAGGCAAAGGATTTGAATCAACCAAGAGGGGATGAGTTAAAGCAAACAGTGACTGCAATAAGACATGATGTATCCAATCAATTGAAACAGACTCGAAGGACGAATAAAAAGGTGAGTGGTATTGCAAAAGAGTTGAGGAAGCTGCACCGAGAAGGTATCAACAATGCTACAAATTCTGTGACTGTTGTTGCTGTTCTGTTTGCTACTGTTGCTTTTGCTGCAATTTTCACTGTTCCAGGAGGTTTTGTAGGAGATAATAATAATAATCCTTCCCCAGGTGCTCCTACACCTCCTAGTGAAGATAATGGAACTTCTGTTGTAGCCAATCGTCTTCCTTTCAGAATATTTTTCATATTCAATGCAATCGCACTGTTCACATCTCTAGCAGTTGTGGTTGTTCAGATAACACTAGTACCATGGGAAACCAAATCTCAAAGAAGAGTGGTATCATTCATCAATAAGCTAATGTGGTTAGCTTCTGTATGTACATCTGTAGCATTTCTTGCATCCACATATATAATTGTTGGTCGTCATGGTCGATGGATGGCAATTCTAGTATCAGCAATAGGTGGTGTGATCATGGTTGGTGTGTTGGGAACCATGACATTTTGTGTAGTAAAATTTCGAAGGAGCAGGTCACTGAGGAAAAGAAGATCTTCTATAAGCCGTGGATCAACATCCTCCCATATATATTCGGAATTTTCAGAATCCGAATATGATAATAAGATGTATGCAATCTAAATTTTATCTACTTTCATAATGCATATGGGAGTCGGTTCTCTTTGCTTTCATGTTCATTTTTTCATTTCCTCCAATCATGGTCTATATGATTATGATGCAATATCTCAGTAAGGCACCATAGTTTGGTTAAGTTGATTGGATAGGATATCCAGGAAATTTTCATGAACATTTTGTTGTATGTTTTATATTGTGTCTCAATGCATATGTTGGAACTCGCAGATTTTTATGCAATATAACATGTGCTTTATCATTGTTTGGGCACGGGAGTCATAATGGGTACGCCACTTTTATTTAGGTCACCCATTAGCTATGACCACAGTGCAGTGCAACATTAAATTAATAGAATTTGACCTCGCCTTCTGATGATGGAGACGTAGAT

Ace file of the UniGene sp_v2.0_unigene3745

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ankyrin repeats-containing protein [Arabidopsis thaliana] sp\|Q9C7A2.1\|Y3236_ARATH RecName: Full=Ankyrin repeat-containing protein At3g12360 gb\|AAG51002.1\|AC069474_1 ankyrin-like protein; 93648-91299 [Arabidopsis thaliana] gb\|AEE75188.1\| ankyrin repeats-co	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	ankyrin repeat-containing	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	73%
Blast2go	plastid	GO:0009536	Cellular Component	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL37

Fln msg:

Fln protein: MSPEDPSTGTIYPEHKYSSFSSSAAAPGGMDAGKDGDPSPQSPGCSVRTLELSNSGKQIGEGSRKQYVKQVTGRYNDTELHLAVKKGDLERVKEILSGLDDPQSLVSEENDMGETPLYVAAEQGHLEVLQELLKSARQDTVVKKNQSGLDAFHTAAKQGHLGIVKELLKYQRDLYMTNDLACCTPLISAATKGHAEVVKELLATDRQLIDISKNNGKNALHLAARAGYVDIVKAFLDMDQQMARRTDKKGQTALHMAAKGAFCLEVVKLLLKVDPAMVMLPDKNGNTALHVATRKKRAQIVNELLSLPDINVNALNRLHKTALDLAEELPSSGEASEIKEALIEANAVKAKDLNQPRGDELKQTVTAIRHDVSNQLKQTRRTNKKVSGIAKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGFVGDNNNNPSPGAPTPPSEDNGTSVVANRLPFRIFFIFNAIALFTSLAVVVVQITLVPWETKSQRRVVSFINKLMWLASVCTSVAFLASTYIIVGRHGRWMAILVSAIGGVIMVGVLGTMTFCVVKFRRSRSLRKRRSSISRGSTSSHIYSEFSESEYDNKMYAI*

Protein Length: 596

Fln nts: ATGGGGATCCAGGAGCTTGTGTGGCCTCCAGCAGCAGC_-_ATGAGCCCTGAAGATCCGAGCACAGGAACGATTTATCCAGAACACAAATATTCCAGCTTCTCTTCTTCTGCTGCAGCACCAGGGGGAATGGATGCAGGGAAGGATGGCGATCCCAGCCCGCAATCCCCGGGCTGTTCCGTCCGGACCCTGGAACTATCGAATTCTGGGAAACAAATCGGAGAGGGATCGAGGAAACAGTATGTGAAGCAGGTGACGGGCAGGTACAATGATACTGAACTGCACCTCGCTGTCAAGAAGGGGGATTTGGAGCGTGTGAAGGAGATTCTCAGTGGGCTTGATGATCCGCAGAGTCTGGTGAGTGAAGAGAATGATATGGGGGAAACTCCTCTATATGTGGCTGCAGAACAGGGGCACTTGGAGGTGTTGCAGGAGCTTCTGAAATCGGCCCGTCAGGATACAGTGGTCAAGAAAAATCAGTCTGGTCTTGATGCTTTCCATACAGCTGCCAAGCAGGGGCATTTAGGCATTGTGAAGGAGTTACTGAAATATCAGCGGGATCTATATATGACTAATGATTTAGCATGTTGCACCCCTCTTATTTCTGCTGCAACTAAGGGGCATGCTGAGGTGGTTAAAGAACTTTTAGCTACTGATCGCCAATTGATAGATATTTCCAAAAACAACGGAAAGAATGCTCTTCATCTGGCTGCAAGAGCTGGTTATGTAGATATAGTAAAAGCCTTTCTGGATATGGATCAACAAATGGCCCGAAGAACAGACAAAAAAGGGCAGACAGCTCTACACATGGCTGCAAAAGGGGCATTTTGCTTGGAAGTAGTGAAATTGCTCCTAAAGGTGGATCCAGCAATGGTTATGTTGCCTGACAAGAATGGAAATACAGCTTTGCATGTTGCTACAAGGAAAAAGAGGGCACAGATTGTGAATGAGTTACTATCATTGCCAGACATCAATGTTAATGCACTGAATAGGTTACACAAGACAGCTTTGGATCTCGCAGAAGAGCTACCGAGCTCAGGAGAGGCATCTGAAATCAAGGAAGCTTTGATTGAAGCTAATGCAGTTAAGGCAAAGGATTTGAATCAACCAAGAGGGGATGAGTTAAAGCAAACAGTGACTGCAATAAGACATGATGTATCCAATCAATTGAAACAGACTCGAAGGACGAATAAAAAGGTGAGTGGTATTGCAAAAGAGTTGAGGAAGCTGCACCGAGAAGGTATCAACAATGCTACAAATTCTGTGACTGTTGTTGCTGTTCTGTTTGCTACTGTTGCTTTTGCTGCAATTTTCACTGTTCCAGGAGGTTTTGTAGGAGATAATAATAATAATCCTTCCCCAGGTGCTCCTACACCTCCTAGTGAAGATAATGGAACTTCTGTTGTAGCCAATCGTCTTCCTTTCAGAATATTTTTCATATTCAATGCAATCGCACTGTTCACATCTCTAGCAGTTGTGGTTGTTCAGATAACACTAGTACCATGGGAAACCAAATCTCAAAGAAGAGTGGTATCATTCATCAATAAGCTAATGTGGTTAGCTTCTGTATGTACATCTGTAGCATTTCTTGCATCCACATATATAATTGTTGGTCGTCATGGTCGATGGATGGCAATTCTAGTATCAGCAATAGGTGGTGTGATCATGGTTGGTGTGTTGGGAACCATGACATTTTGTGTAGTAAAATTTCGAAGGAGCAGGTCACTGAGGAAAAGAAGATCTTCTATAAGCCGTGGATCAACATCCTCCCATATATATTCGGAATTTTCAGAATCCGAATATGATAATAAGATGTATGCAATCTAA___ATTTTATCTACTTTCATAATGCATATGGGAGTCGGTTCTCTTTGCTTTCATGTTCATTTTTTCATTTCCTCCAATCATGGTCTATATGATTATGATGCAATATCTCAGTAAGGCACCATAGTTTGGTTAAGTTGATTGGATAGGATATCCAGGAAATTTTCATGAACATTTTGTTGTATGTTTTATATTGTGTCTCAATGCATATGTTGGAACTCGCAGATTTTTATGCAATATAACATGTGCTTTATCATTGTTTGGGCACGGGAGTCATAATGGGTACGCCACTTTTATTTAGGTCACCCATTAGCTATGACCACAGTGCAGTGCAACATTAAATTAATAGAATTTGACCTCGCCTTCTGATGATGGAGACGTAGAT

Fln Alignment:

Contig3745___TLELSNSGKQIGEGSRKQYVKQVTGRYNDTELHLAVKKGDLERVKEILSGL------DDPQS----------LVSEENDMGETPLYVAAEQGHLEVLQELLKSARQDTVVKKNQSGLDAFHTAAKQGHLGIVKELLKYQRDLYMTNDLACCTPLISAATKGHAEVVKELLATDRQLIDISKNNGKNALHLAARAGYVDIVKAFLDMDQQMARRTDKKGQTALHMAAKGAFCLEVVKLLLKVDPAMVMLPDKNGNTALHVATRKKRAQIVNELLSLPDINVNALNRLHKTALDLAEELPSSGEASEIKEALIEANAVKAKDLNQPRGDELKQTVTAIRHDVSNQLKQTRRTNKKVSGIAKELRKLHREGIXXXXXXXXXXXXXXXXXXXXXXXXXPGGFVGDNNNNPSPGAPTPPSEDNGTSVVANRLPFRIFFIFNAIALFTSLAVVVVQITLVPWETKSQRRVVSFINKLMWLASVCTSVAFLASTYIIVGRHGRWMAILVSAIGGVIMVGVLGTMTFCVVKFXXXXXXXXXXXXXXXXXXXXHIYSEFSESEYDNKMYAI
B8LL37______________SLVLSNSGKALEQTGKKQYVKQVTGRYNDTDLHLAAKKGDLEAVKKILDGLHSENGVQNPQADIEMGEIRSCLVDEENELFETPLYIAAEQGHLDVLKELLKFAHPETLVKKNHTGYDVFHIAAKQGHISIVKELLNYHPDLSKTLDLSNATPLISAATKGHVEVVNELLAKDSQLTGIARSNGKNALHMAARSGYTDIVRALLAKEPQMARRTDKKGQTALHMAAKGANCLDVVKELLQVDPAVVMLPDIKGNTSLHVATRKKREEIVKELLKMPDINVNVMNRLHKTAMDLAEELPNSDEASEIKDCLADFGAVRAKDLNRPR-DELKKTVSEIHHEVYHQLKQTEKTNKNVNGIAKELKKLHREGINNATNSVTVVAVLFATIAFAALFTVPGGY---------------GYSVYGEATVANNTLFQIFFISNAFALFTSLAVVVVQITLVRWETKSQRKVVGVINKLMWLASACTTVAFIASAYIVAGRHELWLAIIVTLIGGIIMVGVLGTMTYFLVKFKRNRSFRKRKSSNSRGSNSWNLPSEFSESEIE-KIYVL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1008	12	87			0.992554
1009	87			12	0.992554
1038			50	50	1.0
1354	10			90	0.90298
1355	90	10			0.90298
1358		90		10	0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
1336	1349	ATA ATA ATA ATA AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain