SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3599

Length: 1147 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3599 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich receptor-like protein kinase [Arabidopsis thaliana] gb\|AAL32758.1\| Unknown protein [Arabidopsis thaliana] gb\|ACN59227.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AEE28522.1\| leucine-rich receptor-like protein	-	-	1.0e-27	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	receptor protein kinase clavata1	-	-	4.2493e-41	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	4.2493e-41	77%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	4.2493e-41	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	4.2493e-41	77%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	4.2493e-41	77%
Blast2go	receptor activity	GO:0004872	Molecular Function	4.2493e-41	77%
Blast2go	peptidase activity	GO:0008233	Molecular Function	4.2493e-41	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	4.2493e-41	77%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	4.2493e-41	77%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	4.2493e-41	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	4.2493e-41	77%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
611	83		16		0.994512
612	83			16	0.994512
628	33		66		1.0
701	22		77		0.999999
704			22	77	0.999999
708		11		88	0.923564
709		11	88		0.923564
710	11			77	0.968132
713	77		11	11	0.968132
720			16	83	0.994512
723		16		83	0.994512
724	16			83	0.994512
725		16	83		0.994512
728	16			83	0.994512
732	80		20		0.995493
733	20			80	0.995493
741			20	80	0.995493
744	20	80			0.995493
745	20	80			0.995493
746	80		20		0.995493
750	20			80	0.995493
751		20	80		0.995493
754		20		80	0.995493
755			20	80	0.995493
834	33			66	0.997452
836			66	33	0.997452
842	33		66		0.997452
850	33		66		0.997452
866			33	66	0.997452
890	75	25			0.996473
911	50		50		1.0
931		25		75	0.996473
956		80		20	0.995493
987	60		20		0.99255
988		80		20	0.995493
1001	20		80		0.995493
1005		60		40	1.0
1029			40	60	1.0
1038	60		40		1.0
1044	80			20	0.995493
1045			20	80	0.995493
1047	80		20		0.995493
1048	80			20	0.995493
1049		80	20		0.995493
1051		20		80	0.995493
1052	25	75			0.996473
1053	75		25		0.996473
1055		25		75	0.996473
1057	0	33		33	0.998258
1058	25			75	0.996473
1059			25	75	0.996473
1060			25	75	0.996473
1063	33			66	0.997452
1064		25	75		0.996473
1065			25	75	0.996473
1067	75	25			0.996473
1068		50	25	25	0.995533
1079		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain