SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3586

Length: 1108 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3586

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, CAZy family GT8 n=2 Tax=Selaginella moellendorffii RepID=D8RE39_SELML	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	23%
Blast2go	cazy family gt8	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	0.0	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		86%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		86%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	86%
Blast2go	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYU2

Fln msg: your sequence is shorter than subject: 314 - 381

Fln protein: GSRILICIHFCVFSDNVLATSVVVNSTTYHADHPELLVFHIVTDGVNFGAMRAWFAMNHYKGAAIEVQNVDDLAWLNASYAPVLKQLQDAETQKYYFTGAQDSKSAIKFHNPKYLSILNHLRFYIPEIYPALEKVVFLDDDVVVQKDLMPLFSINLHGNVNGAVETCLETFHRYHKYLNFSHPKIQSHFDPDACGWAFGMNIFDLIAWKKANVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHALGLGYDPNVDNQLIESAAVLHYNGNLKPWLKLAITRYKPLWEKYVNYSNPLLEQCNIR*

Protein Length: 315

Fln nts: GGTTCACGGATATTAATTTGTATTCACTTTTGTGTCTTCTCAGATAATGTGCTTGCAACGTCTGTTGTGGTGAACTCTACAACATACCATGCTGATCATCCTGAGCTGCTTGTCTTCCACATAGTCACGGATGGAGTGAATTTTGGAGCCATGCGGGCATGGTTTGCTATGAATCATTACAAGGGGGCAGCTATAGAAGTACAAAATGTGGATGACTTGGCATGGCTAAATGCATCATATGCCCCTGTCCTGAAGCAGCTGCAAGATGCTGAAACACAAAAGTACTACTTCACAGGTGCCCAGGATAGCAAAAGTGCAATTAAATTTCATAACCCCAAGTACCTTTCTATTTTGAACCACCTCAGATTCTACATTCCTGAAATATATCCTGCACTCGAGAAAGTCGTGTTTCTGGATGATGATGTGGTGGTTCAGAAAGACTTGATGCCACTATTCTCTATAAATTTGCACGGAAATGTGAATGGGGCAGTGGAAACCTGCCTTGAGACTTTTCATCGATACCACAAGTATCTAAATTTTTCTCACCCCAAGATTCAGTCTCATTTTGATCCTGATGCATGTGGATGGGCCTTTGGGATGAATATCTTTGATCTCATAGCATGGAAGAAAGCTAATGTTACCAGTCGGTATCACTACTGGCAGGAACAAAATGTAGACCGCACACTCTGGAAACTGGGAACTTTGCCTCCAGGCCTACTTACATTTTATGGTTTAACTGAACCTCTTGACAGGCGGTGGCATGCACTAGGTTTAGGATATGATCCCAATGTTGATAACCAACTAATTGAGAGTGCAGCAGTTTTGCATTATAATGGGAATTTGAAGCCCTGGCTGAAGTTGGCAATTACCAGGTATAAACCTCTATGGGAAAAGTATGTGAATTACTCCAACCCATTGTTGGAGCAGTGCAATATCCGTTAA___TATTGGTCTTGTGTTTCTCCTTCTTGATGCTATCTCAATTGTTATTGTGCCAGTCACTGTTATTGTGCCGGTGTTTTAATAATATTCTTTTTGCCTTTGCAATCTTTTTGGGACATTAATTAATGTTATTCGGATGACATTCTTTAAACGAAATTCAATTCTTTTC

Fln Alignment:

Contig3586___QKYYFTGAQDSKSAIKFHNPKYLSILNHLRFYIPEIYPALEKVVFLDDDVVVQKDLMPLFSINLHGNVNGAVETCLETFHRYHKYLN--FSHPKI-QSHFDPDACGWAFGM-----------NIFDLIAWKKANVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHALGLGYDPNVDNQLIESAAVLHYNGNLKPWLKLA----ITRYKPLWEKYVN
A9NYU2______________EKAFASGGEDSKSDFPYFLP----------FYIPKIYQNLRRFIYAVPDIIVKGKVEELFQVNLTNSPVAAVEDCSHNF----EYINAKSSRPWVAQTPYAKNTCILDHSVLLVNVELLAKENFMEVTKWKKLFHTGGRNDQSDQAI-------------MLALNGNYTKLDASWNSRESRFS-GIDSDV----KIFHFDGEKKPWLKQAEGRRHTNMTKIWWDYLS

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
211			20	80	0.995493
346	20			80	0.995493
365	25	75			0.996473
407		75		25	0.996473
503		83		16	0.994512
517	87		12		0.992554
521	87			12	0.992554
522			12	87	0.992554
526	87			12	0.992554
527		87		12	0.992554
528	87		12		0.992554
529	87		12		0.992554
530		12	87		0.992554
532	87		12		0.992554
537	83	16			0.994512
538	83			16	0.994512
539		20		80	0.995493
540	20			80	0.995493
582		16		83	0.994512
585		16	83		0.994512
590	16		83		0.994512
600	83	16			0.994512
603	83			16	0.994512
604	83	16			0.994512
605	16			83	0.994512
606	83	16			0.994512
609	16			83	0.994512
662			75	25	1.0
664	75		25		1.0
665			75	25	1.0
668	75	25			1.0
670	75			25	1.0
671	75			25	1.0
672	75		25		1.0
673	75		25		1.0
678	75	25			1.0
682		75		25	1.0
898	88	11			0.923564
901	88	11			0.923564
907	88	11			0.923564
910	88		11		0.923564
913		88	11		0.923564
914		88		11	0.923564
915	88	11			0.923564
917		88		11	0.923564
918		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain