SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3550

Length: 2214 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene3550
GGGGAAGGCGCGAGATATACATTTTATGCCGTCCGGGCCAGATTGTCACAGACGCTACAGCTCATGGGAAGTACAACGCAAAAGGCAGATTCTATATGGGGATGCAAGAGTTAAAAAGAGAATTGGATTTAGAAAAGATACACATAGATCCTTTCACAAGAAGAGAATTGGATTTAGAAAACATACTTCACATAAGATCCTTTCACAAGGTGAGGCCATGACAGATCACAGAAGACCAATCTGCAATTCAACTACCGTTCCTGCAAAGGAATTGAGGAAGTCTCACAATATGTTGAGCTAAATTGTTAATTCCAAGTCCAACTCACGGTCAATGTGGGTGCTCTTCTCCAATCCCATATACGGGCTATCAATCTGCACAGAGTGTCTCTATGGAGGCATTGTTGTCATCAGGGAGAAGCATTCACGGATCTCTGGCAAGTTTGGGCGGCATTAGAGAAAACCCATTACAGATGAAATGCACAAGTGCTAGGATCCCAATGGGCGGGGTCAATAGAAGGCCTATGATTTTAGCAGTCCATAGGATCCATGGGCCCAAGCTCATAGAAGATGTGAGCGAGGAGCTGAACAAAATAGCTCAGGAGAATATGGATTTTGCACCTGCTAGGAGGCAAGTGCGCGAAGCCTTCGCGCAAGTTCAGCAGAACCTGGATCATTGTCTGTTCAAGATGGCGCCACTAGGAGTAAGGACTAAAGAGAGTTATGAAACGAACTCACGAGGGCTGGAGATATTCACAAAAAACTGGCTTCCGGAGGCTCTACCTCTAAAGGGTATCGTTTGCTTCTGTCATGGATATGGAGATACCTGTACTTTTTTCTTTGAAGGAATTGCTAGAAAATTTGCAGCATCTGGATATGGTGTATTCTCCATGGATTATCCAGGGTTTGGCCTTTCAGAAGGTTTACATGGTTATATTCCAAGCTTTGAAGAACTTATTGATGATGTTATTGAACATTTCTCCAAAGTCAAGGCACAGCCAGAGTTCAAGGATCTTCCAAGCTTCATCTTTGGACAGTCCATGGGCGGGGCAGTGGCTTTGAAGGTTCACTTGAAGCAACCTCTTGCATGGGATGGGACTATTCTTGTTGCTCCTATGTGTAAGATTGCAGAGGATGTCACTCCACCCCAGCAAGTGTTACAGGCTCTGAGACTCTTATCTCGCCTCCTTCCAAAACAAAAACTGTTTCCTCAGAAAGATATATCAGAGTTAGCTTTTAGGGAACTCAAGAAAAGAAAGATGGCAGTGTATAATGTAATCGCCTACAAGGATAAGTTACGCCTTAGGACTGCAATGGAGCTACTGAAAACCACAGCAGAGATAGAAAACCAATTGAATAAGGTTTCATCCCCCTTACTGATTTTGCACGGAGATGCCGACCAGGTGACAGATCCCTCTGTCAGCAAAACTTTGTATGAGAGTTCAATCAGTAGTGACAAAACATTGAAGCTTTATGAAGGAGGATATCATTGTATTCTAGAAGGTGAACCTGATGAGAGGATATTCCAGGCCCTCAATGACATAACTTCCTGGCTTGATGTGCATTGTAGTAAAACTGTAAAAGCGGAGGCTAATGACAGTTTTGTTTAGCCCCCATTATAGCTATTTTATTTCCAACGCAATTACCAGTTGAAAATTCTCCAGAAGCAGTTATACGAACTTACAAGCAGTAAAGTATTTGGGTATACTCTATAAGAACCGACGAGTGTGGAGGTTATGCCATGGCCTTGTTTTATAAACTCAGAACAGATAAAAGATAAAAACACGCAGGTGCTATTGTCTCTTTACTAAATCAGTACCTGCGACACACAAATCAAAGCTACCAGTAAGTTATATATACCTTTAATAGAACGTGAATACGAATTAAACATCCACATGTAATTTGAATAAAACGGTCTGAGTAGCATGCAGGACCTGGTTATGATGGTTCTTGATTAACAATGGTCAATTTGGGTTGGGTATATGCATTCTTAACACAAAATGGATGCAAATTGTGAGGTTCCATGCTTTGTCATCTCTCTTCTTATGCTCACGCCATAATGTGCAATGTGAGGGCTGAGTTCAATTGTATTTGATCCTAAAGACCATTTCTCCTGATAGGAATGAAAACGTTTCTTTTAAAGTTCATTAAGCGATGCTTTGATGGTTGAGATGTGGTATTGCCATGTTAATGACTGTTTAGATTTTGAAGAATGTA

Ace file of the UniGene sp_v2.0_unigene3550 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] gb\|AAK25929.1\|AF360219_1 putative lipase [Arabidopsis thaliana] gb\|AAK93696.1\| putative lipase [Arabidopsis thaliana] gb\|AED92248.1\| hydrolase, alpha/beta fold family protein [Arabidopsis th	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	70%
Blast2go	monoglyceride lipase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acylglycerol lipase.	EC:3.1.1.23	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	79%
Blast2go	Metabolic pathways	01100		0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	acylglycerol lipase activity	GO:0047372	Molecular Function	0.0	79%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7T940

Fln msg:

Fln protein: MEALLSSGRSIHGSLASLGGIRENPLQMKCTSARIPMGGVNRRPMILAVHRIHGPKLIEDVSEELNKIAQENMDFAPARRQVREAFAQVQQNLDHCLFKMAPLGVRTKESYETNSRGLEIFTKNWLPEALPLKGIVCFCHGYGDTCTFFFEGIARKFAASGYGVFSMDYPGFGLSEGLHGYIPSFEELIDDVIEHFSKVKAQPEFKDLPSFIFGQSMGGAVALKVHLKQPLAWDGTILVAPMCKIAEDVTPPQQVLQALRLLSRLLPKQKLFPQKDISELAFRELKKRKMAVYNVIAYKDKLRLRTAMELLKTTAEIENQLNKVSSPLLILHGDADQVTDPSVSKTLYESSISSDKTLKLYEGGYHCILEGEPDERIFQALNDITSWLDVHCSKTVKAEANDSFV*

Protein Length: 407

Fln nts: GGGGAAGGCGCGAGATATACATTTTATGCCGTCCGGGCCAGATTGTCACAGACGCTACAGCTCATGGGAAGTACAACGCAAAAGGCAGATTCTATATGGGGATGCAAGAGTTAAAAAGAGAATTGGATTTAGAAAAGATACACATAGATCCTTTCACAAGAAGAGAATTGGATTTAGAAAACATACTTCACATAAGATCCTTTCACAAGGTGAGGCCATGACAGATCACAGAAGACCAATCTGCAATTCAACTACCGTTCCTGCAAAGGAATTGAGGAAGTCTCACAATATGTTGAGCTAAATTGTTAATTCCAAGTCCAACTCACGGTCAATGTGGGTGCTCTTCTCCAATCCCATATACGGGCTATCAATCTGCACAGAGTGTCTCT_-_ATGGAGGCATTGTTGTCATCAGGGAGAAGCATTCACGGATCTCTGGCAAGTTTGGGCGGCATTAGAGAAAACCCATTACAGATGAAATGCACAAGTGCTAGGATCCCAATGGGCGGGGTCAATAGAAGGCCTATGATTTTAGCAGTCCATAGGATCCATGGGCCCAAGCTCATAGAAGATGTGAGCGAGGAGCTGAACAAAATAGCTCAGGAGAATATGGATTTTGCACCTGCTAGGAGGCAAGTGCGCGAAGCCTTCGCGCAAGTTCAGCAGAACCTGGATCATTGTCTGTTCAAGATGGCGCCACTAGGAGTAAGGACTAAAGAGAGTTATGAAACGAACTCACGAGGGCTGGAGATATTCACAAAAAACTGGCTTCCGGAGGCTCTACCTCTAAAGGGTATCGTTTGCTTCTGTCATGGATATGGAGATACCTGTACTTTTTTCTTTGAAGGAATTGCTAGAAAATTTGCAGCATCTGGATATGGTGTATTCTCCATGGATTATCCAGGGTTTGGCCTTTCAGAAGGTTTACATGGTTATATTCCAAGCTTTGAAGAACTTATTGATGATGTTATTGAACATTTCTCCAAAGTCAAGGCACAGCCAGAGTTCAAGGATCTTCCAAGCTTCATCTTTGGACAGTCCATGGGCGGGGCAGTGGCTTTGAAGGTTCACTTGAAGCAACCTCTTGCATGGGATGGGACTATTCTTGTTGCTCCTATGTGTAAGATTGCAGAGGATGTCACTCCACCCCAGCAAGTGTTACAGGCTCTGAGACTCTTATCTCGCCTCCTTCCAAAACAAAAACTGTTTCCTCAGAAAGATATATCAGAGTTAGCTTTTAGGGAACTCAAGAAAAGAAAGATGGCAGTGTATAATGTAATCGCCTACAAGGATAAGTTACGCCTTAGGACTGCAATGGAGCTACTGAAAACCACAGCAGAGATAGAAAACCAATTGAATAAGGTTTCATCCCCCTTACTGATTTTGCACGGAGATGCCGACCAGGTGACAGATCCCTCTGTCAGCAAAACTTTGTATGAGAGTTCAATCAGTAGTGACAAAACATTGAAGCTTTATGAAGGAGGATATCATTGTATTCTAGAAGGTGAACCTGATGAGAGGATATTCCAGGCCCTCAATGACATAACTTCCTGGCTTGATGTGCATTGTAGTAAAACTGTAAAAGCGGAGGCTAATGACAGTTTTGTTTAG___CCCCCATTATAGCTATTTTATTTCCAACGCAATTACCAGTTGAAAATTCTCCAGAAGCAGTTATACGAACTTACAAGCAGTAAAGTATTTGGGTATACTCTATAAGAACCGACGAGTGTGGAGGTTATGCCATGGCCTTGTTTTATAAACTCAGAACAGATAAAAGATAAAAACACGCAGGTGCTATTGTCTCTTTACTAAATCAGTACCTGCGACACACAAATCAAAGCTACCAGTAAGTTATATATACCTTTAATAGAACGTGAATACGAATTAAACATCCACATGTAATTTGAATAAAACGGTCTGAGTAGCATGCAGGACCTGGTTATGATGGTTCTTGATTAACAATGGTCAATTTGGGTTGGGTATATGCATTCTTAACACAAAATGGATGCAAATTGTGAGGTTCCATGCTTTGTCATCTCTCTTCTTATGCTCACGCCATAATGTGCAATGTGAGGGCTGAGTTCAATTGTATTTGATCCTAAAGACCATTTCTCCTGATAGGAATGAAAACGTTTCTTTTAAAGTTCATTAAGCGATGCTTTGATGGTTGAGATGTGGTATTGCCATGTTAATGACTGTTTAGATTTTGAAGAATGTA

Fln Alignment:

Contig3550___IEDVSEELNKIAQENMDFAPARRQVREAFAQVQQNLDHCLFKMAPLGVRTKESYETNSRGLEIFTKNWLPE-ALPLKGIVCFCHGYGDTCTFFFEGIARKFAASGYGVFSMDYPGFGLSEGLHGYIPSFEELIDDVIEHFSKVKAQPEFKDLPSFIFGQSMGGAVALKVHLKQPLAWDGTILVAPMCKIAEDVTPPXXXXXXXXXXXXXXXXXXLFPQKDISELAFRELKKRKMAVYNVIAYKDKLRLRTAMELLKTTAEIENQLNKVSSPLLILHGDADQVTDPSVSKTLYESSISSDKTLKLYEGGYHCILEGEPDERIFQALNDITSWLDVHCS
D7T940______________IEGVSEEMNAIASQSLDSASARRRVRSAFLDVQQQLDHCLFKIAPTGIRTEEWYEKNSRGLEIFSKCWLPKPGIRTKGSLCFCHGYGDTCTFFFEGIAKQIAASGYAVYALDYPGFGLSDGLHGYISSFDELVDDVIDHYTKIKGRPELRGLPHFILGQSMGGAVTLKAHLKEPSGWDGVILVAPMCKIAEDVTPPPAVLKVLTLLSKAMPKAKLFPQKDLAELAFRDSRKRKMAAYNVISYNDQMRLRTAVELLEATSDIEMQLEKVSSPLLILHGAADKVTDPLVSQFLYEKASSKDKTLKLYEEGYHCILEGEPDDRIFTVLRDIIAWLDSHCS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1039		6	93		0.999453
1147	90		9		0.999872
1254	88		11		0.923564
1393	10		90		0.90298
1394		10		90	0.90298
1452	14	85			0.993533
1453		85	14		0.993533
1743		66		33	0.997452
2045	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain