SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2734

Length: 2429 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene2734
CGTCGTGACCTTGGCTGTCACTCATTCTTTTTCTTCAACTTTGATTGGCGCTACCCTTCCTCCTCTGCAGCTGATCTCACTAACAGCAACACAAACCCCAGCTATGCCGAAGTGAAAAAAACCTTCGCTAGCCATCTCTATTGTGTTCTTCTGTGATGTGGATTAAAACCCTTTTTAGATCGGCAGGAATTGCAGGAGGGACTCGATTTCCCTCCTCAGCAAGAATTGCAAGAGGGACTATTCGAAGCCTCTCGGTCCATATGGTCGTTTCTCTCCAAAATCTGCAGATATATGATGGTGTTCAGATCAACCGCATCTGGGCTACTATTTTCCAGTGTTTTACCATATCAAATCTGTTGACCTTTAGGAAAAACAGAGCAGTAGTGCATGTATGTGGAGATCTTGACGCCTACTCTCAGCATGATGCCGCCCAGCCACTGGTTTGAACTGACTGGTGAAGCTTTCCCAATAGACTGCAGAGTGCCTAATATCTTTAATTTGTTATTGTTGCCATAATGTTACAACTACTTGAGACTGAAGGGCATCTGTTTGAACGAGTTTCAAAGAGGGTGCACTTTCCAAATCTCATATGGCTTTCATGACGTGAATGCCCCTGCTCTTACTTGCCTTCTTGGATTCCAATGAAAAATTTAAGAGTCATATGGCTTTCTTGGCCTGACTGTCTCTGTTTTAACTTACCTTCGTGGATTCCAATGAAGAATTTAAGAGTTTTCACGTTCAGCGGAAAGTATTGATAACATTGTGGCAAGGCAAATCGCGAGGCACCTCTGCAGTTGCGGGAGTTATAAATTTTTGTTATTTTTTGGAAGATTTCAAATTCATAGGCCAGCTGAAGCACATAGAATGGGTTTTTGTCTACTATGTTTTTTATCAGAATCTGCCATAAAATTTTTGTAATATGAGGTCGTTGAACCTCTAGTGTTAAAATGGTGCTTCAGCGTTGGTTGGGAACTTGAAGAACCTCCAACACATTGAGCTGTTTGGGTGCGAGTTGTTTGGGTACAGATGTTCGGAGAGGTTGCCAGAATCCCTTGGCAACTTGACGAACCTCCAACACATTGAACTGTATGAAGAGGCTGCCAGAATCTTTCAGCAACTTGACGAACCTCCAACACACCGAGCTGTATGAGTGACATGATGAATCTCCAACACATCAACCTGTCTAACATTGAGTGTTTGGATGAACCTTCAACACAATCGAAAGACATGGATGTTAGTCCTTTAGAGTCATTTAGTTTGGAGAGGTTGCCAGAATCCTTGGGTAATTTGACCTCCAACACATCTACATCGAAGGTACGAGTGCTAGTCCTTTGAAGTTTTTTAGTTTGAAGAAGCTGCAAGAATCCTTGGATAATTTGAGCAGCCTCCAACACATCAAACTTCTTAGGTGAGTTTGGAAAAGTGGACAGAGTCCTTTGGTTATTTGATAAACCTCCAACACGCAGAGCTGTCTAGCTATGGGTATTTGGAGAGTCTGCAAAAGGTTTTTCTGATTTGACAAACCTCCATCATATGAAACTGTCTTTTGGTTATATGAGAAAGCTCCTAAAATATGAAGTTGTCATAACTCTTTGGTAACTTGACTAACCTTCAATTTATGGAGCTGTCTGGGTGCCAGAGTATGGAGATGCTGCTAGTGTTCTTTGATGGCTTGAGTAACCTCCAACAAATGGACACATGGTAACTTGACTAAGGTCCCACAATTGGGGCCGTCTGGTTGCAAGAGTGTGTTTGGAGGCTGCTAGAGTCTTAAAGTAACTTGACAAACCTCCAACACATGGAGCTGTCTGGGTGCCAGAGTTTGGAGAGTCTGCAAGAGTCCTTTGGTAATTTGAACAACGCATGGAATTGTTTGGGTACCAGAGTTTGGAAAGGTGGCCAAATTTTTTAGCAACTTGATGGAACTCAGGGCTCCAACCCATAGAGCTGCTGCCTTGGTCTTAGTGCGGGATTTGGAAAGGCTACCAGATCCATTTGGTAACTTGACAACCCTCCAACATATCCACCTATTAGAGTGCAATAATTTGCAGGCATCAGATCGTGTGACTTTGAAGAGCATACTGACAATGATATCTTTGGAATACTTGTAGACATCAGATCGTGTGAATCTGAAGAGCATATTGTAAAAACATTGTTGTCTTTGTAACACTTGCAGGCTTCCGATTCTGTGAATCTAAAGAGCATACTGATTTATATAATTAGTGAATCATCGTGCCTCAAGTTTTTAGTCTGAGGTGGGATCAGTGATTACTAAACACACTGTCCCAACCCAAAGGCTACGGAGATAAATTTGTAGCTAGTAAATTCAATAAAAGTTTCTCAATTACAATTTAGGGCAGGAATTATGAAAACCCTGATTTGTCTTTCTCTGTTTAATTATATAGAATGTGAATGGTGAAGTAATTTTC

Ace file of the UniGene sp_v2.0_unigene2734

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative truncated TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS7_PINMO	-	-	9.0e-16	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	nbs lrr	-	-	1.75654e-15	50%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	1.75654e-15	50%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA61

Fln msg: warning!, putative chimeric sequence! or repetitive structure Unexpected STOP codon at 3' end. Distance to subject end: 292 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 473 - 524

Fln protein: LTFVDSNEEFKSFHVQRKVLITLWQGKSRGTSAVAGVINFCYFLEDFKFIGQLKHIEWVFVYYVFYQNLP*NFCNMRSLNL*C*NGASALVGNLKNLQHIELFGCELFGYRCSERLPESLGNLTNLQHxxxxMKRLPESFSNLTNLQHTExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDLERLPDPFGNLTTLQHIHLLECNNLQASDRVTLKSILTMISLEYL*

Protein Length: 474

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTTTTCTTCAACTTTGATTGGCGCTACCCTTCCTCCTCTGCAGCTGATCTCACTAACAGCAACACAAACCCCAGCTATGCCGAAGTGAAAAAAACCTTCGCTAGCCATCTCTATTGTGTTCTTCTGTGATGTGGATTAAAACCCTTTTTAGATCGGCAGGAATTGCAGGAGGGACTCGATTTCCCTCCTCAGCAAGAATTGCAAGAGGGACTATTCGAAGCCTCTCGGTCCATATGGTCGTTTCTCTCCAAAATCTGCAGATATATGATGGTGTTCAGATCAACCGCATCTGGGCTACTATTTTCCAGTGTTTTACCATATCAAATCTGTTGACCTTTAGGAAAAACAGAGCAGTAGTGCATGTATGTGGAGATCTTGACGCCTACTCTCAGCATGATGCCGCCCAGCCACTGGTTTGAACTGACTGGTGAAGCTTTCCCAATAGACTGCAGAGTGCCTAATATCTTTAATTTGTTATTGTTGCCATAATGTTACAACTACTTGAGACTGAAGGGCATCTGTTTGAACGAGTTTCAAAGAGGGTGCACTTTCCAAATCTCATATGGCTTTCATGACGTGAATGCCCCTGCTCTTACTTGCCTTCTTGGATTCCAATGAAAAATTTAAGAGTCATATGGCTTTCTTGGCCTGACTGTCTCTGTTTTAACTTACCTTCGTGGATTCCAATGAAGAATTTAAGAGTTTTCACGTTCAGCGGAAAGTATTGATAACATTGTGGCAAGGCAAATCGCGAGGCACCTCTGCAGTTGCGGGAGTTATAAATTTTTGTTATTTTTTGGAAGATTTCAAATTCATAGGCCAGCTGAAGCACATAGAATGGGTTTTTGTCTACTATGTTTTTTATCAGAATCTGCCATAAAATTTTTGTAATATGAGGTCGTTGAACCTCTAGTGTTAAAATGGTGCTTCAGCGTTGGTTGGGAACTTGAAGAACCTCCAACACATTGAGCTGTTTGGGTGCGAGTTGTTTGGGTACAGATGTTCGGAGAGGTTGCCAGAATCCCTTGGCAACTTGACGAACCTCCAACACxxxxxxxxxxxxATGAAGAGGCTGCCAGAATCTTTCAGCAACTTGACGAACCTCCAACACACCGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATTTGGAAAGGCTACCAGATCCATTTGGTAACTTGACAACCCTCCAACATATCCACCTATTAGAGTGCAATAATTTGCAGGCATCAGATCGTGTGACTTTGAAGAGCATACTGACAATGATATCTTTGGAATACTTGTAGACATCAGATCGTGTGAATCTGAAGAGCATATTGTAAAAACATTGTTGTCTTTGTAACACTTGCAGGCTTCCGATTCTGTGAATCTAAAGAGCATACTGATTTATATAATTAGTGAATCATCGTGCCTCAAGTTTTTAGTCTGAGGTGGGATCAGTGATTACTAAACACACTGTCCCAACCCAAAGGCTACGGAGATAAATTTGTAGCTAGTAAATTCAATAAAAGTTTCTCAATTACAATTTAGGGCAGGAATTATGAAAACCCTGATTTGTCTTTCTCTGTTTAATTATATAGAATGTGAATGGTGAAGTAATTTTC

Fln Alignment:

Contig2734___TSAVAGVINFCYFLEDF-KFIGQLKHIEWVFVYYV-FYQNLP*NFCNMRSLNL*C*NGASAL------VGNLKNLQHIELFGCELFGYRCSERLPESLGNLTNLQHIELxxxxxxxxxxxxxxxxxxxxxxxxxxLNCMKRLPESFSNLTNLQHTELxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLERLPDPFGNLTTLQHIHLLECNNLQ
D5AA61______________TNLQSMVLYECWRLERLPESLGNLMNLQSMMLHWCESLERLPESLGNLMNLQSMVLHECSKLESLPESLGNLTNLQSMVLHECDHL-----ERLPESLGNLTNLQSMELxxxxxxxxxxxxxxxxxxxxxxxxxxLESLERLPKSLGNLTNLQSMELxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLERLPESLGNLTNLQSMVLHKCGSLE

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
224	33		66		0.997452
284		33	66		0.997452
456			12	87	0.992554
462	87		12		0.992554
463			87	12	0.992554
484	16		83		0.994512
488	16	83			0.994512
495		83	16		0.994512
506	20			80	0.995493
507	80			20	0.995493
511		20		80	0.995493
512		20		80	0.995493
521	40		60		1.0
525		60		40	1.0
526	60			40	1.0
552	25			75	0.996473
557	75		25		0.996473
560	75	25			0.996473
568	75		25		0.996473
569	25		50	25	0.995533
591	66		33		0.997452
608	33		66		0.997452
610			66	33	0.997452
628		20		80	0.995493
636		20		80	0.995493
648			80	20	0.995493
651	75		25		0.996473
665		16		83	0.994512
694		16		83	0.994512
700		16		83	0.994512
708		16	83		0.994512
748	20		20	60	0.99255
1694	66			33	0.997452
1695	66		33		0.997452
1696			33	66	0.997452
1787			75	25	0.996473
1791	75		25		0.996473
1792	75		25		0.996473
1793		75	25		0.996473
2154	85	14			0.999981
2201	83		16		0.999991
2336	25			75	0.996473
2337	25			75	0.996473
2338	75		25		0.996473
2339	66			33	0.997452
2344		33		66	0.997452
2347	33	66			0.997452
2348	66			33	0.997452
2351	66	33			0.997452
2362		33		66	0.997452
2379		66	33		0.997452
2388		33		66	0.997452
2390			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain