SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2623

Length: 1354 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2623

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB87154.1\| putative protein [Arabidopsis thaliana] gb\|AAQ65154.1\| At5g13470 [Arabidopsis thaliana] dbj\|BAD44269.1\| unknown protein [Arabidopsis thaliana] gb\|AED91898.1\| uncharacterized protein [Arabidops	-	-	1.0e-21	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	59%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal	IPR006109	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9D8

Fln msg:

Fln protein: MSLVDYASSSDDDIEENQHEQEQHGQGSTSRPCNQSQTSSLHGQQSEAGKNSIESMIELPDASELLKSLAAPANQTGSDHSSRVVTAMAASASRKRPETNGFAALSPHRKLPRGNLPPSRIPPDTSGGLLIPPQLRGRSNVVTEDIDKLFVRKKKAHDDNREESIVQ*

Protein Length: 169

Fln nts: CGTCGTGACCTTGGTGTCTTTCAATTCATTCCCTTCGCGATCAAACCACGGTACCGTTACTCTGGGTTAGCGGACGGCCTTGTTCCGTCATCTAACCGTGGTTAAACACGCACGGGCTTGTCCCGTCATCCAGCCCTGTTTGCTTGTCGTGCCAGGCTTACTATTTTCTCAAATTCACTTATCTGGAGAGCAGCCATC_-_ATGTCTCTCGTGGATTATGCATCTTCTTCCGATGATGACATTGAAGAAAACCAGCATGAACAAGAACAGCATGGGCAAGGCTCGACCTCGCGACCTTGCAATCAGAGCCAGACAAGCTCATTACATGGGCAGCAGTCAGAAGCAGGAAAGAACTCTATAGAATCAATGATAGAACTCCCAGATGCTTCAGAATTGCTTAAGTCACTAGCTGCACCCGCTAACCAAACAGGCAGTGACCATTCTTCTAGGGTTGTTACAGCTATGGCTGCAAGTGCATCAAGGAAAAGGCCAGAGACAAATGGATTCGCAGCGTTATCACCACACAGAAAGCTTCCAAGAGGGAACCTGCCACCTTCAAGGATTCCTCCTGATACTTCGGGAGGTCTTTTGATTCCACCTCAACTTAGGGGGAGGAGCAATGTTGTAACAGAAGATATTGACAAACTGTTTGTGAGGAAGAAAAAAGCTCACGATGACAATAGGGAGGAATCGATTGTTCAATAA___CTGTACAAAGATGCATCTTTCATTAAACATATCATTATTAACAATCAAGTTCTGTATTACTAGTTTCTGATACAACGGAAGCTGCTAACATGATGAAAAGCTCAAGAAAGATGTGTCCTTCGAGCCATGATCATTCATTCAAGAGATGTTATCTGCTCGCATAAATGATTGGCAAAGTTTTGTGGGCTTACAATGCAGAGGGTAACGTTGTGCCATATGATCCACGTAGTTTCTATTCTTATATGCAATGTGTTTGTTACTGTGATTTGTGATGTTTTTGAGATTATTTTGGCAGAGGGTGTTTTTTGATTTCTGGAAATCTCAACTATTTCTATTATTTCCGTTCTCTGTTCTCTGTTTTTAAGGTGACAAAACTTATCATAACTCAGGTGTCAATAAGCAGTGAGGACAGTTATCACTGATTGCTATCCATGAATGTGGGCTAACTCATCAGTATCATTCAAGGAAAACTGTGCCACCTGAAATAACCTACCGTTGTTATGTATTAAAGTAGACTTTCACTCTTACTAGATGCCTTTGGATCTTGGGCCATTAACCTGTTTCCTTAGAAACATCCAAAGAAGGTGAATTGTTATCCAATCAAAAGTATTTCCAGGTCTTATTCCAAGACCAAGACCAAAAATCCAATGAT

Fln Alignment:

Contig2623___MSLVDYASSSDDDIXXXXXXXXXXXXX-STSRPCNQSQTSSLHGQQSEAGKNS-IESMIELPDASELLKSLAAPANQTGSDHSSRVVTAMAASASRKRPETNGFAALSPHRKLPRGNLPPSRIPPDTSGGLLIPPQLRGRSNVVTEDIDKLFVRKKKAHDDNREESIVQ
D5A9D8______________MSLVDYASSSDDDIEENQPEQEEQHGQGSSSRPSNQSQTSSEHGQQSEAGENSSIESMIELPDASELLKSLAAPANQTGSDHSSRVATAMAASASRKRPETNGFASLPPHRKVPRGNLPPSRIPPDTSGGLLIPPQLRGRSNVVTEDIEKLFVRRKKAQDDSGEESIVQ

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
167	33			66	1.0
169			33	66	1.0
170		33	66		1.0
171			33	66	1.0
172		33	66		1.0
250	87	12			0.992554
252	12	87			0.992554
292			50	50	1.0
303		87		12	0.992554
307	11		88		0.923564
308		88		11	0.923564
309		88	11		0.923564
310	88		11		0.923564
533		10		90	0.90298
612	16		83		0.994512
614	16		83		0.994512
738		90		10	0.90298
991	80	20			0.995493
992			20	20	0.99255
994		20		80	0.995493
995			20	80	0.995493
998	20		80		0.995493
1000	80	20			0.995493
1001			80	20	0.995493
1002	80			20	0.995493
1005		20	80		0.995493
1010		20		80	0.995493
1011	20			80	0.995493
1012		20		80	0.995493
1014		20		80	0.995493
1015	20		80		0.995493
1022		22	77		0.999999
1024	77			22	0.999999
1025	77		22		0.999999
1027		22		77	0.999999
1030		77		22	0.999999
1031	77		22		0.999999
1032	77		22		0.999999
1035	77		22		0.999999
1037		22		77	0.999999
1038	11			88	0.923564
1040	11			88	0.923564
1042		11		88	0.923564
1043	11			88	0.923564
1044	88		11		0.923564
1137		72		27	1.0
1289	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain