SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2375

Length: 1331 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2375

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	brefeldin A-sensitive Golgi protein-like [Arabidopsis thaliana] emb\|CAB79394.1\| brefeldin A-sensitive Golgi protein-like [Arabidopsis thaliana]	-	-	61%
FL-Next	tr=Conserved oligomeric Golgi complex component, putative; Ricinus communis (Castor bean).	-	-	66%
Blast2go	conserved oligomeric golgi complex subunit	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	76%
Blast2go	Golgi organization	GO:0007030	Biological Process	76%
Blast2go	membrane	GO:0016020	Cellular Component	76%
Blast2go	vacuole	GO:0005773	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	COG complex component, COG2	IPR009316	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9RAH9

Fln msg: Distance to subject end: 372 aas, your sequence is shorter than subject: 388 - 756

Fln protein: MADVQLPVSRGPRSVTALFGEDSNDSQQPLWFKKDVFLQSDFESESYIADLRRFIALDTLRAELRGHLAVLKNELVELINRDYADFVNLTTKLVDVEGAVLRMRTPLTELKAKISSVRDSIDSSLLALQNGLQRRAEASSSREILELLLDTSHVVSKVEKLMVELQSMPEEGPISQIEPTSKSSFSNGTMAEISENGANLEETRSMLLERIASEMNRLKFYIARAQNLPFLQNMEKRIQSASLLLDNSLRRCFEIGLECRDENVIYNCLRAYAAIDNTKAAEETFRSTIVARYIQQVISSAPSKDVVGGSGDQLEDYYQQIKKFVEKDCKFLLDIAASANSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGKPAEFLINYKSSMDFL

Protein Length: 389

Fln nts: ATGGGATGTTTACACGAAAGAAGACTTGGCCATCCTGTTCAATCCTACCGAATAAGTCAGTCATGCACGTCGGAAAGGAGATGTCATAAGTTCCGGTTATCGATTTCCATTCCTCGTTGCATAGCCAGAGCAGAGGGCCGTCCATAGAGAAGGTAAGCCAAAGAAA_-_ATGGCCGATGTACAATTACCTGTGTCGAGGGGACCAAGATCTGTGACAGCACTGTTTGGAGAAGACTCCAACGATTCGCAGCAGCCATTATGGTTCAAAAAAGACGTCTTTCTGCAATCCGATTTCGAGAGCGAATCATACATTGCAGATCTGAGGCGCTTTATTGCCCTGGATACACTCAGAGCAGAGCTCCGGGGCCATCTCGCCGTGCTTAAGAATGAATTGGTGGAGTTGATCAACAGAGATTATGCGGATTTCGTTAATTTAACTACCAAGCTCGTGGATGTGGAAGGTGCAGTGCTAAGAATGCGAACGCCGTTAACGGAACTCAAGGCCAAAATAAGCTCCGTTAGGGACAGCATCGATTCCTCCCTTCTGGCTCTCCAAAACGGTTTACAGAGGCGGGCCGAGGCTTCTTCTTCCAGAGAAATACTTGAGCTTCTTCTCGACACCTCTCATGTCGTCTCAAAGGTAGAGAAACTGATGGTGGAATTGCAAAGCATGCCTGAAGAAGGACCCATTTCTCAAATTGAGCCAACTAGCAAGAGTTCCTTTAGCAATGGTACCATGGCAGAGATATCTGAGAATGGTGCAAATCTTGAGGAAACTCGAAGCATGCTTTTGGAACGAATTGCAAGTGAAATGAATCGCTTGAAGTTTTATATTGCTCGTGCACAGAACCTCCCCTTTCTTCAGAATATGGAGAAAAGGATTCAAAGTGCTAGTCTATTACTAGATAACAGCTTACGTCGCTGCTTTGAAATTGGCCTGGAGTGTCGTGATGAAAATGTCATTTATAATTGTCTTCGTGCATATGCTGCAATTGATAACACTAAAGCAGCAGAAGAAACTTTTCGGTCAACCATAGTTGCTCGATATATTCAACAGGTTATATCTTCAGCCCCTTCAAAGGATGTTGTTGGAGGTTCTGGTGATCAACTTGAGGACTACTATCAGCAAATCAAGAAATTTGTGGAGAAGGATTGCAAGTTTCTACTAGATATTGCTGCATCAGCAAATTCAGGTCTACATGTGTTTGACTTCTTAGCCAATTCAATTTTGAAGGAGGTTCTATCAGCCATTCAAAAAGGAAAACCTGGTGCATTCTCTCCTGGCAAGCCAGCAGAGTTTTTGATAAACTACAAATCAAGCATGGATTTTCTAA

Fln Alignment:

Contig2375___SRGPRSVTALFGEDSNDSQQPLWFKKDVFLQSDFESESYIADLRRFIALDTLRAELRGHLAVLKNELVELINRDYADFVNLTTKLVDVEGAVLRMRTPLTELKAKISSVRDSIDSSLLALQNGLQRRAEASSSREILELLLDTSHVVSKVEKLMVELQSMPEEGPISQIEPTSKSSFSNGTMAEISENGANLEETRSMLLERIASEMNRLKFYIARAQNLPFLQNMEKRIQSASLLLDNSLRRCFEIGLECRDENVIYNCLRAYAAIDNTKAAEETFRSTIVARYIQQVISSAPSKDVVGGSGDQLEDYYQQIKKFVEKDCKFLLDIAASANSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGKPAEFLINYKSSMDFL
B9RAH9______________SPAPRSATDLFS-DPLDSH-PLWFKPNLFLSPTFDSESYISELRTFVPFDTLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIEGFRGSVEGSLVALRNGLQQRSEAASAREILELLLDTFHVVSKVEKLIKELPSLPADWSNGDVNSTVKNAMSNGISLQSIENGTNLRETQSMLLERIASEMNRLKFYMAHSQNLPFIENMEKRIQSASLLLDASLGHCFVDGLEHRDENAIYNCLRAYAAIDNTNSAEEIFRTTIVAPLIHKIIPHGPSGTVAGVSGDGLENDYYQIKQCIEKDCKFLLEISSAENSGLHAFDFLANSILKEVLSAIQKGKPGAFSPGRPTEFLMNYKSSLDFL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
631	12		87		0.992554
632		12		87	0.992554
633	12	87			0.992554
635		87		12	0.992554
640			85	14	0.993533
706	57		42		1.0
875	85			14	0.993533
876	85		14		0.993533
877	85		14		0.993533
1055		80		20	0.995493
1056	80		20		0.995493
1057			80	20	0.995493
1132		83	16		0.994512
1133	83			16	0.994512
1201		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain