SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2268

Length: 2294 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene2268
TCCGCTAATATTTTCGCAACTCTCTTGAATCTAACGTCCAGAAAACTCTCCTCATTTCTCGCACACCCTAGCCCTCGGATCCCGCCAAACTGCGTCCAAAACCCAGTGAAATCATTCCTTTTGCTTTGGACAAGTGCCTTTCTGTGTGCAAAGACAAAGCCGAAGGCGGGCCATCGTTCGCAAAGCAAAAGGCACCCCACCATCTTTACTCTTCGGCAACAGCAATTCCTCGAGCACATTCATCGTCTCGTATTTGCTTCAACGCTCTCAACGGTTGAGTGCAGAGTTTCAAGATTCACATGCGTCAGTTTTCCGGCAGCTTATTTGACTTAGAAATTCTGATAAATGGCATCCTAGGATTTCGCAGAAGGTCAGTGGACGCAGTTGCCGCGTCTGAAACATTGCAAGGGGTCCAGATTCCTGAGATTTCATCAGAAGCAGCAAGGATTCGAAAAACTGCAATCAGAAATTAATCAAATCCCAGTATCATTTTTTATCGAGCTTCACAAAACCTACCGGCGAAAAAAGAACTGAAACCTGACCGTGCACGCGAGAAGTATTTAACAGGATGTCTGCCAATACGTCGGCGTCTCCGACTGCAGGAGTTGGAGGAGCTACTGTGCCGCTTCGGCAAAGTGCTCGAAAGCGGACCACCGCTGTCGTTACGCCAAACGCCTTGGAAACGGAACGAAACGTCACAGAAACTACTGACGATCTCCGGGTACTCAGGGAGAAAAATATTCACCGGGAGACTGCACATTTGGCTGCTGAAGCCGACGGGAATTTGTCGCAGGGTAAGGATTCTGGTTATGGTAAGAGTTTATGTTCGGGATTTTGGGAGGGAAAATGCTTTACCTCCTCAGCAGAATGGTAAATTAGCAAACAAGGTCCATGATCATGATCAGGGGGTGAAAAAGGGGGTCAAGGTCGTGCACAGGAGTAAAAGCCCTGTCCGCGGTGGAATCCCTCGGACAACTTCGAAGTGGCAACTGGCGGCCAGGGTTTTTACCAAGTGGGTTATGCTTTTCATTTTTCTGGGCGGAATTGGACAGACGTTGTGGAATTGGACCATGAAACCCTCCGTCAAGGATACTGTTGGTCCTGGCAATTTCGTATCGGAGGGCCAGATTGCGGAGCTGGAGGAGTTACTGAAGACGACGACGAAGATGTTGCAGTTTCAGGTAGAATTGGTGGATATGAAGTACGGGAAGGAAATGGAGGGGTTGAAGAAAGATTTAGAGGAGAGTATAGAGGATCATGCCACTGCTTTTTACACTGAGCTTCGGAATTTGAAGGCGCAGACTGGTGACATCGAGGAATCGCTGTTGAAGTTAAGGGGTTCAGGGGTTTTAACCAAGGACGATGTGCTAGGCTTACTGAATCAGGTGGTCGACAAGCGGGCGAGCGAGGGAGAGGGACAGGCTTTGAGCTTAGACGATATCAGGGCCGTGGCGAGGCGGATGGTGGAAGTGGAGATTGAGCGGCATGCTGCAGACGGGCTGGGAATGGTTGATTATGCTGTGGGCACGGGTGGTGGCCGGGTGGTGCATCATTCTGAAGGGTACTTATACGGGAATGGAAGGAAATGGGGTCTTGCCGCAGTTGGATCTTTGCTCAAGACAGGAAGCCCAATGCATCCTTATGCGGGTAAGGTATTGGAACCGAGCTTTGGGGAGCCTGGTCAGTGTTTGCCTTTGAAGGGGAGCAGGGTGTTTGTGGACATTGCTCTAAGGACTGCTATTTTTGTCAATGCTGTTACTCTCGAGCATGTGGCAAAGAGTGTTGCTTATGATAGATCAAGTGCTCCGAAGGAATTTCGTATCTTTGGATGGTTTCATCAGCAAAAGGAAGAAATAAGTGAGGAAACCCAGCAAATGTTTCTGCTGGGGGAATTCACTTATGATCTCGAAAAGAGCAGTGTACAGACATTCAATCTTCCACTTGACTCAACGGGAAAGCTTGTAAACCTGATCAAGTTGGATGTGCTATCAAATCAAGGAAGTCCTTCACATACTTGCATATATCGCTTGAGGGTTCATGGTTCAGAACCTGAAGTCAGACCAGCAGCAGTAGAAGCTTAGATGCACGGGAGCCTATATTTTTCATCCCTCAATTGGGGTAAAGTGTTGGAATATTTTGATGGCTCTTCGCTTTGAGGTGTTCAGCTAGAGATCACTTTATTCATCGAGAGGTGCTTTGTCACCAATGGAAATGATTGTGTACTGAAAACATGCTTTGGTATTTTGCCTGTTCTTTTGTAATTTAATTGTGTATCATTGATTTTGTGTTCAACT

Ace file of the UniGene sp_v2.0_unigene2268

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SAD1/UNC-84 domain protein 1 [Arabidopsis thaliana] dbj\|BAB11521.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL08289.1\| AT5g04990/MUG13_15 [Arabidopsis thaliana] gb\|AAM47476.1\| AT5g04990/MUG13_15 [Arabidopsis thaliana] gb\|AED90813.1\| SAD1/UNC-84	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	50%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sad1/UNC-like, C-terminal	IPR012919	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8T8N8

Fln msg: your sequence is longer than subject: 424 - 336

Fln protein: MVRVYVRDFGRENALPPQQNGKLANKVHDHDQGVKKGVKVVHRSKSPVRGGIPRTTSKWQLAARVFTKWVMLFIFLGGIGQTLWNWTMKPSVKDTVGPGNFVSEGQIAELEELLKTTTKMLQFQVELVDMKYGKEMEGLKKDLEESIEDHATAFYTELRNLKAQTGDIEESLLKLRGSGVLTKDDVLGLLNQVVDKRASEGEGQALSLDDIRAVARRMVEVEIERHAADGLGMVDYAVGTGGGRVVHHSEGYLYGNGRKWGLAAVGSLLKTGSPMHPYAGKVLEPSFGEPGQCLPLKGSRVFVDIALRTAIFVNAVTLEHVAKSVAYDRSSAPKEFRIFGWFHQQKEEISEETQQMFLLGEFTYDLEKSSVQTFNLPLDSTGKLVNLIKLDVLSNQGSPSHTCIYRLRVHGSEPEVRPAAVEA*

Protein Length: 425

Fln nts: TCCGCTAATATTTTCGCAACTCTCTTGAATCTAACGTCCAGAAAACTCTCCTCATTTCTCGCACACCCTAGCCCTCGGATCCCGCCAAACTGCGTCCAAAACCCAGTGAAATCATTCCTTTTGCTTTGGACAAGTGCCTTTCTGTGTGCAAAGACAAAGCCGAAGGCGGGCCATCGTTCGCAAAGCAAAAGGCACCCCACCATCTTTACTCTTCGGCAACAGCAATTCCTCGAGCACATTCATCGTCTCGTATTTGCTTCAACGCTCTCAACGGTTGAGTGCAGAGTTTCAAGATTCACATGCGTCAGTTTTCCGGCAGCTTATTTGACTTAGAAATTCTGATAAATGGCATCCTAGGATTTCGCAGAAGGTCAGTGGACGCAGTTGCCGCGTCTGAAACATTGCAAGGGGTCCAGATTCCTGAGATTTCATCAGAAGCAGCAAGGATTCGAAAAACTGCAATCAGAAATTAATCAAATCCCAGTATCATTTTTTATCGAGCTTCACAAAACCTACCGGCGAAAAAAGAACTGAAACCTGACCGTGCACGCGAGAAGTATTTAACAGGATGTCTGCCAATACGTCGGCGTCTCCGACTGCAGGAGTTGGAGGAGCTACTGTGCCGCTTCGGCAAAGTGCTCGAAAGCGGACCACCGCTGTCGTTACGCCAAACGCCTTGGAAACGGAACGAAACGTCACAGAAACTACTGACGATCTCCGGGTACTCAGGGAGAAAAATATTCACCGGGAGACTGCACATTTGGCTGCTGAAGCCGACGGGAATTTGTCGCAGGGTAAGGATTCTGGTT_-_ATGGTAAGAGTTTATGTTCGGGATTTTGGGAGGGAAAATGCTTTACCTCCTCAGCAGAATGGTAAATTAGCAAACAAGGTCCATGATCATGATCAGGGGGTGAAAAAGGGGGTCAAGGTCGTGCACAGGAGTAAAAGCCCTGTCCGCGGTGGAATCCCTCGGACAACTTCGAAGTGGCAACTGGCGGCCAGGGTTTTTACCAAGTGGGTTATGCTTTTCATTTTTCTGGGCGGAATTGGACAGACGTTGTGGAATTGGACCATGAAACCCTCCGTCAAGGATACTGTTGGTCCTGGCAATTTCGTATCGGAGGGCCAGATTGCGGAGCTGGAGGAGTTACTGAAGACGACGACGAAGATGTTGCAGTTTCAGGTAGAATTGGTGGATATGAAGTACGGGAAGGAAATGGAGGGGTTGAAGAAAGATTTAGAGGAGAGTATAGAGGATCATGCCACTGCTTTTTACACTGAGCTTCGGAATTTGAAGGCGCAGACTGGTGACATCGAGGAATCGCTGTTGAAGTTAAGGGGTTCAGGGGTTTTAACCAAGGACGATGTGCTAGGCTTACTGAATCAGGTGGTCGACAAGCGGGCGAGCGAGGGAGAGGGACAGGCTTTGAGCTTAGACGATATCAGGGCCGTGGCGAGGCGGATGGTGGAAGTGGAGATTGAGCGGCATGCTGCAGACGGGCTGGGAATGGTTGATTATGCTGTGGGCACGGGTGGTGGCCGGGTGGTGCATCATTCTGAAGGGTACTTATACGGGAATGGAAGGAAATGGGGTCTTGCCGCAGTTGGATCTTTGCTCAAGACAGGAAGCCCAATGCATCCTTATGCGGGTAAGGTATTGGAACCGAGCTTTGGGGAGCCTGGTCAGTGTTTGCCTTTGAAGGGGAGCAGGGTGTTTGTGGACATTGCTCTAAGGACTGCTATTTTTGTCAATGCTGTTACTCTCGAGCATGTGGCAAAGAGTGTTGCTTATGATAGATCAAGTGCTCCGAAGGAATTTCGTATCTTTGGATGGTTTCATCAGCAAAAGGAAGAAATAAGTGAGGAAACCCAGCAAATGTTTCTGCTGGGGGAATTCACTTATGATCTCGAAAAGAGCAGTGTACAGACATTCAATCTTCCACTTGACTCAACGGGAAAGCTTGTAAACCTGATCAAGTTGGATGTGCTATCAAATCAAGGAAGTCCTTCACATACTTGCATATATCGCTTGAGGGTTCATGGTTCAGAACCTGAAGTCAGACCAGCAGCAGTAGAAGCTTAG___ATGCACGGGAGCCTATATTTTTCATCCCTCAATTGGGGTAAAGTGTTGGAATATTTTGATGGCTCTTCGCTTTGAGGTGTTCAGCTAGAGATCACTTTATTCATCGAGAGGTGCTTTGTCACCAATGGAAATGATTGTGTACTGAAAACATGCTTTGGTATTTTGCCTGTTCTTTTGTAATTTAATTGTGTATCATTGATTTTGTGTTCAACT

Fln Alignment:

Contig2268___TLWNWTMKPSVKDTVGPGNFVSEGQIAXXXXXXXXXXXMLQFQVELVDMKYGKEMEGLKKDLEESIEDHATAFYTELRNLKAQTGDIEESLLKLRGSGVLTKDDVLGLLNQVVDKRASEGEGQALSLDDIRAVARRMVEVEIERHAADGLGMVDYAVGTGGGRVVHHSEGYLYGNGRKWGLAAVGSLLKTGSPM-HPYAGKVLEPSFGEPGQCLPLKGSRVFVDIALRTAIFVNAVTLEHVAKSVAYDRSSAPKEFRIFGWFHQ--QKEEISEETQQMFLLGEFTYDLEKSSVQTFNLPLDSTGKLVNLIKLDVLSNQGSPSHTCIYRLRVHGSEP
D8T8N8______________TAWKWSRDPGV----APG--ISIAQMKELEDFSRKTTKWMQVQLELVDMKIGKEIEGLRRDVEDKIEEQALALETSIMNLKSQVEDMDSSVQRLTQDGLLTKKEGMELIASIIQQRAAEESGKSLTLDDVRIAARQIVEAELEKHSADGIGRVDYALGSGGGKIIEHSEGFFTGGRAGW-LSILGAGLSAGGAVRHPMAHKVLEPSYGEPGQCLPLKGSNVFVEIALRTHIHPDAITIEHVPKSVAYDVTSAPKDFRVFGWLERSIQAGTIARPVKKL-LLGEFSYSLDGSNIQTFSFPEEVSRELINTVRIHITSNHGSSSHTCLYRVRVHGFEP

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
406	80			20	0.995493
407	80			20	0.995493
408		20	80		0.995493
410		33	66		1.0
414		80	20		0.995493
415	80			20	0.995493
423			80	20	0.995493
424	80		20		0.995493
426	80	20			0.995493
428			20	80	0.995493
544		11		88	0.923564
573		10		90	0.90298
577		90		10	0.90298
746		87	12		0.992554
747		87	12		0.992554
810		14		85	0.993533
813			85	14	0.993533
1508	83		16		0.994512
1544	14		85		0.993533
1545			85	14	0.993533
1583	87			12	0.992554
1836		25		75	1.0
1861	12		87		0.992554
1862		12		87	0.992554
1863	12		87		0.992554
1864	87			12	0.992554
1882			16	83	0.999991
1889			81	18	0.999994
1895	81			18	0.999994
1896		18		81	0.999994
1897	18			81	0.999994
1899	81			18	0.999994
1901	18			81	0.999994
2295	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain