SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2156

Length: 1455 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2156 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent peptidase, putative n=1 Tax=Ricinus communis RepID=B9R814_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	75%
Blast2go	atp-dependent protease la domain-containing protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	85%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6H1K6

Fln msg:

Fln protein: MSWAQIALPLFMWSHGSKRSLPCNAQHCFSGSPDSISVDVRGPCLSKNYCALFRKERRRSAQMTRCSSSEATNADHVESNGLVELPLFPLPLVLFPGAILPLQIFEFRYRMMMHTLLQTDLRFGVIYTDQLAGIVDVGCVGEVVKHERLVDDRFFLICKGQERFRVVKLVRTKPYLVAQVQWLEDRPSDDGQEDDLEKLANEVETYMKDVIRISNRLNGKPEKESPEDLRKGLFPTPFSFFVGSTFEGAPAEQQALLELEDTAARLKREKETLRNTLNYLTAAAAVKDVFPSSD*

Protein Length: 296

Fln nts: TTTTTTGGAGACAGTTCTTGTGTAACGCCAGGAAGCTTATATGCTGAATCTGTTATGAAGGATGTTAGCAGAGGTCTGTATTGCTTTGTCGTTGGTGGGGTAAGTTAACAGTCAGTTTGAAGTT_-_ATGTCTTGGGCTCAAATTGCACTTCCTTTGTTCATGTGGTCACATGGAAGCAAGAGGTCGTTGCCTTGCAATGCGCAGCATTGTTTTAGCGGTAGCCCTGATTCTATTAGCGTTGATGTAAGGGGCCCTTGTTTGAGTAAGAATTACTGTGCATTATTCAGAAAAGAAAGGAGGAGAAGCGCCCAAATGACCAGATGCTCATCTTCAGAGGCAACCAATGCAGATCATGTAGAGTCCAATGGATTAGTTGAACTGCCACTGTTTCCACTCCCACTGGTTCTGTTTCCTGGTGCAATTCTACCCCTGCAGATCTTTGAATTCAGGTACAGAATGATGATGCACACACTTCTGCAGACAGACCTTAGGTTTGGGGTGATTTACACGGATCAGTTAGCAGGGATTGTTGACGTGGGTTGTGTTGGGGAGGTTGTGAAGCACGAGAGGCTTGTGGATGACCGATTCTTTCTGATATGCAAAGGGCAGGAAAGATTTCGTGTGGTAAAATTGGTGAGGACTAAGCCTTATCTGGTGGCCCAAGTCCAGTGGTTGGAGGATCGACCCTCGGATGATGGCCAGGAAGACGATCTGGAGAAGCTTGCGAATGAGGTCGAGACATATATGAAGGATGTGATTCGAATATCCAATCGGTTGAACGGGAAGCCTGAGAAAGAATCCCCAGAGGATCTTAGGAAAGGCCTGTTTCCCACTCCTTTTTCATTCTTCGTGGGCAGCACATTCGAAGGGGCACCGGCAGAGCAGCAAGCGCTCTTGGAGCTGGAGGATACCGCCGCCCGGCTGAAGAGGGAGAAGGAGACCCTCAGGAACACTCTCAATTATTTGACAGCTGCAGCTGCAGTGAAAGATGTCTTTCCATCTTCGGACTGA___TAGTTAACCTAGAGATATGTCGACAAACACAGCTATAGGCAAGGTCTAGTATGGCTTCTATTCCATCCAACTTGAATGTATTTTCTCAATTTGATGCCCTGTTCTTTTCCAACTCAATGCTGTCATGCTCGATTTCTTTTAGATTTAACAAGTTTTGGGTGATTTTGACAACATAGAAACTGCCCTCATAGTGAAGCAGCTTAGCTAAAAGATTTAAAGAACAGCTATAAGTTATCATAGGCAATGTTTCTTCCAAAAAATTAGTTGAGTTACTTAGTGTAGGTCCCTGGCATGTTTCCGATGTACATGGAATATGAAAAGAAATCTTATGAATTGCAAGATTTTCTTCAACCCAGTTGTAGTATGCATTTGTAACTCGCTCCAGATCTCCTCCGATCCCTACTTTAATAATAAAAATTTCTTGATTGCATTCGCTGTTAATGTTT

Fln Alignment:

Contig2156___HCFSGSPDSISVDVRGPCLSKNYCALFRKERRRSAQMTRCSSSEATNADHV---ESNGXXXXXXXXXXXXXXPGAILPLQIFEFRYRMMMHTLLQTDLRFGVIYTDQLAGIVDVGCVGEVVKHERLVDDRFFLICKGQERFRVVKLVRTKPYLVAQVQWLEDRPSDDGQEDDLEKLANEVETYMKDVIRISNRLNGKPEKESPEDLRKGLFPTPFSFFVGSTFEGAPAEQQALLELEDTAARLKREKETLRNTLNYLTAAAAVKDVFPSS
F6H1K6______________NCRFFSPSSSVIPV--PSLARH-----RHHRRRKENSLRCSASSFSEKHHTGSPKSDDVVELPLFPLPLVLFPGAILPLQIFEFRYRMMMHTLLQTDLRFGVIYSDATTGTADVGCVGEVVKHERLVDDRFFLICKGQERFRVTNLVRTKPYLVAEVTWLEDRPSGDGDE-DLEALANEVETYMKDVIRLSNRLNGKPEKET-QDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTSARLKREKETLRNTLNYLTAASAVKDVFASS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
273		16		83	0.994512
1085	80	20			0.995493
1114	85		14		0.993533
1115	14			85	0.993533
1116	14			85	0.993533
1150	16		83		0.994512
1152		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain