SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2153

Length: 3388 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2153
ATGGGGGAAGTCTCCAGGTTTGCGGTCTGAAACTTCGGTGGGAGAAAGGGGACGCGCGCAGTCTACACACAAATTATATACGTCATAGATCTACGGTTTCGTGCTCCCCTCTCCCACCTCATCTTTAAATTCAATTAATATCGACATTCGCCTCCCTGATTGGCCGGGGTTTCAGCGGCATTCAATCGCCCGGCGTTACAGGGTTATTTTGATTGTAAGATCATGGAAAACGGTGGAGTCGAACCCGAGAACGGGCGGTACGGGGCGCAGGATGGCAGACATTACCGGGCCGTAGCCGCTCATGACAGGCCTGTGGTTGAATTAGCTACTGTTCCAGCGAGATCTGCAGATGCAAATAGCTCTGAGGATTCTATCAAGAGAATAAAGATTCCAGGTGCATCGCGAGAGACAAATGGAAGGGAGCAAGGACCTTCTTCTCCGACAAAGGAAATATTTGATCGAACTGGGAGGGAATCTAAACTGGAGTTGTTTGGATTTGATTCTCTTGTTGACATTCTGGGTCTTAGAAGTATGGCAGGCCAACAGGCTCCAGCACCAACAAGCCCTAGGGAGGGCGGAAGATGTTTCAATTACACTCGGTCAACCGAAGAAAAAGGATGTCAAATTGGGGACACTTATGGGAGTTTTTGTACCATGCCTGCAAAATATCTTGGGAATTATTTTCTACATTCGGTTTTCATGGATTGTTGGCATTGCAGGAATTGGGCAAAGTCTTATACTTGTATCTCTGTGTTGCCTCTGTACCTTTTTAACTGGGATATCATTGAGTGCTATTGCAACTAATGGAGCCATGAAGGGTGGCGGACCATATTATCTTATTGGTAGAGCACTGGGTCCTGAGGTTGGTGTAAGCATTGGCCTTTGCTTCTTCCTGGGTAATGCAGTTGCTGGTGCATTATATATTTTAGGAGCTGTTGAGACCTTTCTGGATGCTGTACCAAGTGCTGGAATTTTTAAAGAGAGTGCAACGAATCTGAATGCAACTTCCATAACAGGGACACCTTCTGAAGCAACTATACTGACCCCGAGTTTGCATGATTTACAAGTTTATGGAGTAGTTGTAACCATTATTTTATGTTTTGTTGTATTTGGCGGGGTGAAAATAATCAACAAGGTTGCACCAGCTTTCCTTATTCCTGTTCTGTTATCACTATTCTGCATTTTTATTGGCATATTTGCCTCCCCAGGTCATCATGATAAATCAAAAATTACTGGATTAAGATGGCATACGTTCAAGCATAACTGGAATTCAGAGTACCAGCGCACCAATCGAGCTGGTATTCCTGCTCCAGATGGATTAATTTATTGGAATTTTGAGTCATTGCTGGGACTTTTCTTTCCTGCTGTGACTGGCATTATGGCTGGTTCAAATCGTTCTGCATCCTTAAGAGACACTCAGCGTTCAATACCTATTGGAACATTGGCAGCAATTGGTACTACTACTGCTATGTATTTGGTTTCTGTATTGATGTTTGGAGCTGTAGCCACAAGAGAGGCACTTTTAACAGACAGGCTTCTGACAGCAACAGTCGCTTGGCCAGTGCCAGCAGTTATCTACATTGGTATTATCTTATCCACTCTTGGAGCAGCACTTCAGAGTCTTACAGGCGCTCCTCGCCTGCTTGCAGCAATTGCTAATGATGATATTATCCCAATACTGAAATACTTCAAGGCTGCTGACAGTACTGAACCATATCTTGCAACTCTTTTTACAGCGTTTATCTGTGCTGCCTGTGTAGTACTTGGAAATATTGATCTGATCTCACCCGTGATAACTATGTTCTTCCTTCTATGCTATTCTGGTGTGAACTTGTCATGTTTCCTTTTGGATTTTCTGGATGCACCAAGCTGGCGCCCAAGGTGGAAATTTCACCATTGGAGCCTTTCACTTATTGGTGCTATGCTTTGTATTGTTATCATGTTCCTGATATCTTGGACATTCACTATTATCTCTTTAGCACTTGCAAGCCTTTTATACTATTATGTATGTCTCAAGGGGAAAGCTGGTGACTGGGGAGATGGTTTCAAAAGTGCATATTTCCAACTTGCTTTGCGAAGTCTTCGCTCCTTAGGAGCGAATCAAGTCCATCCAAAGAACTGGTACCCAATTCCCCTGATATTCTGTAGGCCATGGGGCAAACTACCTGAGAATGTGCCTTGTCATCCAAAGCTAGCTGATTTTGCAAATTGCATGAAGAAAAAGGGTCGGGGCATGTCAATCTTCGTTTCAATATTAGATGGCGACTACAATGAAAAGGCCGAAGAAGCAAAAGTTGCATGTCGACAATTGGCTGCATATATTGATTATAAGAACTGTGAAGGGGTTGCAGAAATCATTGTAGCTGAGAACATGCAAGAAGGATTTCGTGGTATTGTCCAAACAATGGGCCTTGGAAATCTTAAGCCCAACATTGTTGTAATGCGTTACCCAGAAATATGGAGACAAGAAAATTCGAAAGAGATCTCAGAAACGTTTGTTAGCATCATAAATGACTGTATTGTTGCTAATAAAGCAGTTGTCACAGTGAAAGGTTTGGATGAATGGCCAGGAGAGTACCAGAAACAGTATGGAACAATTGACCTTTATTGGATAGTACGTGATGGCGGTCTCATGTTGCTTCTTTCTCAGCTCTTACTTACGAAGGAAAGCTTTGAGAGTTGTAAGATTCAGGTATTCTGCATCGCTGAAGAGGACACCGAGGCAGAGGAGTTGAAGACAGATGTAAAAAAGTTTCTGTACGACCTTCGCATGCAAGCTGAAGTAATTGTCATTACCATGAAATCATGGGAGGCACACAAAGAAGATCAAGGTTTAGAAACCGGACGTGAAGATGCCATGGAGGCATTTTCAAGAGCACGGAAACGTATAGCATTGCAGGCTGCAGACATGAAGAGGAAAATGAATGCAGAAGGAGGGTCCACATCTATAAATGAGCTTCAAGTTAATAAATTCCTTTACACTACTTTGAAACTAAATGCTACTATCTTGCGGTATTCAAGGATGGCAGCTGTCGTGTTAGTTAGTTTGCCACCACCACCACCAAATCATCCTCCATACCTCTACATGGAGTATATGGATCTTTTGGTAGAGAACATCCCCAGACTTCTTATGGTTCGTGGATATCGAAAAGATGTCGTTACTCTTTTCACTTAGATTTTACCAGTCTTTACTGGTCAATTATTTGCATGTTTTTAAGGTACCATTTATTCTTTAGTTGTATGTCCCAAAGAATCAATTTTTCTGGCAGAGTAAATCCATTGTCACAAATACACACAGGCCTATTTTTAGAGGGCATATTCTAATTGGGAGAGTTGTAATCATCCAATGTTGTATAGCAATGATATCCGTTCCGAGTCATATTCTACT

Ace file of the UniGene sp_v2.0_unigene2153 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cation-chloride cotransporter 1 n=3 Tax=Poaceae RepID=CCC1_ORYSJ	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	cation-chloride co-transporter 1	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	87%
Blast2go	sodium ion transport	GO:0006814	Biological Process	87%
Blast2go	chloride transport	GO:0006821	Biological Process	87%
Blast2go	sodium:potassium:chloride symporter activity	GO:0008511	Molecular Function	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Na/K/Cl co-transporter superfamily	IPR004842	-	0.0	-
Sma3	Amino acid permease domain	IPR004841	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9L5

Fln msg: your sequence is longer than subject: 921 - 458

Fln protein: MEGSKDLLLRQRKYLIELGGNLNWSCLDLILLLTFWVLEVWQANRLQHQQALGRAEDVSITLGQPKKKDVKLGTLMGVFVPCLQNILGIIFYIRFSWIVGIAGIGQSLILVSLCCLCTFLTGISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYILGAVETFLDAVPSAGIFKESATNLNATSITGTPSEATILTPSLHDLQVYGVVVTIILCFVVFGGVKIINKVAPAFLIPVLLSLFCIFIGIFASPGHHDKSKITGLRWHTFKHNWNSEYQRTNRAGIPAPDGLIYWNFESLLGLFFPAVTGIMAGSNRSASLRDTQRSIPIGTLAAIGTTTAMYLVSVLMFGAVATREALLTDRLLTATVAWPVPAVIYIGIILSTLGAALQSLTGAPRLLAAIANDDIIPILKYFKAADSTEPYLATLFTAFICAACVVLGNIDLISPVITMFFLLCYSGVNLSCFLLDFLDAPSWRPRWKFHHWSLSLIGAMLCIVIMFLISWTFTIISLALASLLYYYVCLKGKAGDWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYNEKAEEAKVACRQLAAYIDYKNCEGVAEIIVAENMQEGFRGIVQTMGLGNLKPNIVVMRYPEIWRQENSKEISETFVSIINDCIVANKAVVTVKGLDEWPGEYQKQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDTEAEELKTDVKKFLYDLRMQAEVIVITMKSWEAHKEDQGLETGREDAMEAFSRARKRIALQAADMKRKMNAEGGSTSINELQVNKFLYTTLKLNATILRYSRMAAVVLVSLPPPPPNHPPYLYMEYMDLLVENIPRLLMVRGYRKDVVTLFT*

Protein Length: 922

Fln nts: ATGGGGGAAGTCTCCAGGTTTGCGGTCTGAAACTTCGGTGGGAGAAAGGGGACGCGCGCAGTCTACACACAAATTATATACGTCATAGATCTACGGTTTCGTGCTCCCCTCTCCCACCTCATCTTTAAATTCAATTAATATCGACATTCGCCTCCCTGATTGGCCGGGGTTTCAGCGGCATTCAATCGCCCGGCGTTACAGGGTTATTTTGATTGTAAGATCATGGAAAACGGTGGAGTCGAACCCGAGAACGGGCGGTACGGGGCGCAGGATGGCAGACATTACCGGGCCGTAGCCGCTCATGACAGGCCTGTGGTTGAATTAGCTACTGTTCCAGCGAGATCTGCAGATGCAAATAGCTCTGAGGATTCTATCAAGAGAATAAAGATTCCAGGTGCATCGCGAGAGACAA_-_ATGGAAGGGAGCAAGGACCTTCTTCTCCGACAAAGGAAATATTTGATCGAACTGGGAGGGAATCTAAACTGGAGTTGTTTGGATTTGATTCTCTTGTTGACATTCTGGGTCTTAGAAGTATGGCAGGCCAACAGGCTCCAGCACCAACAAGCCCTAGGGAGGGCGGAAGATGTTTCAATTACACTCGGTCAACCGAAGAAAAAGGATGTCAAATTGGGGACACTTATGGGAGTTTTTGTACCATGCCTGCAAAATATCTTGGGAATTATTTTCTACATTCGGTTTTCATGGATTGTTGGCATTGCAGGAATTGGGCAAAGTCTTATACTTGTATCTCTGTGTTGCCTCTGTACCTTTTTAACTGGGATATCATTGAGTGCTATTGCAACTAATGGAGCCATGAAGGGTGGCGGACCATATTATCTTATTGGTAGAGCACTGGGTCCTGAGGTTGGTGTAAGCATTGGCCTTTGCTTCTTCCTGGGTAATGCAGTTGCTGGTGCATTATATATTTTAGGAGCTGTTGAGACCTTTCTGGATGCTGTACCAAGTGCTGGAATTTTTAAAGAGAGTGCAACGAATCTGAATGCAACTTCCATAACAGGGACACCTTCTGAAGCAACTATACTGACCCCGAGTTTGCATGATTTACAAGTTTATGGAGTAGTTGTAACCATTATTTTATGTTTTGTTGTATTTGGCGGGGTGAAAATAATCAACAAGGTTGCACCAGCTTTCCTTATTCCTGTTCTGTTATCACTATTCTGCATTTTTATTGGCATATTTGCCTCCCCAGGTCATCATGATAAATCAAAAATTACTGGATTAAGATGGCATACGTTCAAGCATAACTGGAATTCAGAGTACCAGCGCACCAATCGAGCTGGTATTCCTGCTCCAGATGGATTAATTTATTGGAATTTTGAGTCATTGCTGGGACTTTTCTTTCCTGCTGTGACTGGCATTATGGCTGGTTCAAATCGTTCTGCATCCTTAAGAGACACTCAGCGTTCAATACCTATTGGAACATTGGCAGCAATTGGTACTACTACTGCTATGTATTTGGTTTCTGTATTGATGTTTGGAGCTGTAGCCACAAGAGAGGCACTTTTAACAGACAGGCTTCTGACAGCAACAGTCGCTTGGCCAGTGCCAGCAGTTATCTACATTGGTATTATCTTATCCACTCTTGGAGCAGCACTTCAGAGTCTTACAGGCGCTCCTCGCCTGCTTGCAGCAATTGCTAATGATGATATTATCCCAATACTGAAATACTTCAAGGCTGCTGACAGTACTGAACCATATCTTGCAACTCTTTTTACAGCGTTTATCTGTGCTGCCTGTGTAGTACTTGGAAATATTGATCTGATCTCACCCGTGATAACTATGTTCTTCCTTCTATGCTATTCTGGTGTGAACTTGTCATGTTTCCTTTTGGATTTTCTGGATGCACCAAGCTGGCGCCCAAGGTGGAAATTTCACCATTGGAGCCTTTCACTTATTGGTGCTATGCTTTGTATTGTTATCATGTTCCTGATATCTTGGACATTCACTATTATCTCTTTAGCACTTGCAAGCCTTTTATACTATTATGTATGTCTCAAGGGGAAAGCTGGTGACTGGGGAGATGGTTTCAAAAGTGCATATTTCCAACTTGCTTTGCGAAGTCTTCGCTCCTTAGGAGCGAATCAAGTCCATCCAAAGAACTGGTACCCAATTCCCCTGATATTCTGTAGGCCATGGGGCAAACTACCTGAGAATGTGCCTTGTCATCCAAAGCTAGCTGATTTTGCAAATTGCATGAAGAAAAAGGGTCGGGGCATGTCAATCTTCGTTTCAATATTAGATGGCGACTACAATGAAAAGGCCGAAGAAGCAAAAGTTGCATGTCGACAATTGGCTGCATATATTGATTATAAGAACTGTGAAGGGGTTGCAGAAATCATTGTAGCTGAGAACATGCAAGAAGGATTTCGTGGTATTGTCCAAACAATGGGCCTTGGAAATCTTAAGCCCAACATTGTTGTAATGCGTTACCCAGAAATATGGAGACAAGAAAATTCGAAAGAGATCTCAGAAACGTTTGTTAGCATCATAAATGACTGTATTGTTGCTAATAAAGCAGTTGTCACAGTGAAAGGTTTGGATGAATGGCCAGGAGAGTACCAGAAACAGTATGGAACAATTGACCTTTATTGGATAGTACGTGATGGCGGTCTCATGTTGCTTCTTTCTCAGCTCTTACTTACGAAGGAAAGCTTTGAGAGTTGTAAGATTCAGGTATTCTGCATCGCTGAAGAGGACACCGAGGCAGAGGAGTTGAAGACAGATGTAAAAAAGTTTCTGTACGACCTTCGCATGCAAGCTGAAGTAATTGTCATTACCATGAAATCATGGGAGGCACACAAAGAAGATCAAGGTTTAGAAACCGGACGTGAAGATGCCATGGAGGCATTTTCAAGAGCACGGAAACGTATAGCATTGCAGGCTGCAGACATGAAGAGGAAAATGAATGCAGAAGGAGGGTCCACATCTATAAATGAGCTTCAAGTTAATAAATTCCTTTACACTACTTTGAAACTAAATGCTACTATCTTGCGGTATTCAAGGATGGCAGCTGTCGTGTTAGTTAGTTTGCCACCACCACCACCAAATCATCCTCCATACCTCTACATGGAGTATATGGATCTTTTGGTAGAGAACATCCCCAGACTTCTTATGGTTCGTGGATATCGAAAAGATGTCGTTACTCTTTTCACTTAG___ATTTTACCAGTCTTTACTGGTCAATTATTTGCATGTTTTTAAGGTACCATTTATTCTTTAGTTGTATGTCCCAAAGAATCAATTTTTCTGGCAGAGTAAATCCATTGTCACAAATACACACAGGCCTATTTTTAGAGGGCATATTCTAATTGGGAGAGTTGTAATCATCCAATGTTGTATAGCAATGATATCCGTTCCGAGTCATATTCTACT

Fln Alignment:

Contig2153___MFFLLCYSGVNLSCFLLDFLDAPSWRPRWKFHHWSLSLIGAMLCIVIMFLISWTFTIIXXXXXXXXXXYVCLKGKAGDWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYNEKAEEAKVACRQLAAYIDYKNCEGVAEIIVAENMQEGFRGIVQTMGLGNLKPNIVVMRYPEIWRQENSKEISETFVSIINDCIVANKAVVTVKGLDEWPGEYQKQYGTIDLYWIVRDGGXXXXXXXXXLTKESFESCKIQVFCIAEEDTEAEELKTDVKKFLYDLRMQAEVIVITMKSWEAHKEDQGLETGREDAMEAFSRARKRIALQAADMKRKMNAEGGSTSINELQVNKFLYTTLKLNATILRYSRMAAVVLVSLXXXXXXXXPYLYMEYMDLLVENIPRLLMVRGYRKDVVTLFT
D5A9L5______________MFFLLCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLIGAMLCIVIMFLISWTFTIVSLALASLLYYYVCLKGKAGDWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYNEKAEEAKVACRQLGAYIDYKNCEGVAEIIVAENMQEGFRGIVQTMGLGNLKPNIVVMRYPEIWRQENSKEISETFVSIINDCIVANKAVVTVKGLDEWPGEYQKQFGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDTEAEELKTDVKKFLYDLRMQAEVIVITMKSWEAHREDQGLETGREDAMEAFSRARKRIVLQAADMKRKMNAEGGSTSVNEHQVNKFLYTTLKLNATILRYSRMAAVVLVSLPPPPPNHPPYFYMEYMDLLVENIPRLLMVRGYRKDVVTLFT

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
848	80			20	0.995493
1502		33		66	0.997452
1507		66		33	0.997452
1830		14		85	0.993533
1833		87		12	0.992554
1836	87			12	0.992554
1837			87	12	0.992554
1838	12	87			0.992554
1839	12		87		0.992554
1842	12			87	0.992554
1843	12		87		0.992554
1978	22			77	0.999999
1980	22			77	0.999999
1981		77	22		0.999999
1982		22		77	0.999999
1983		22		77	0.999999
1993		22	77		0.999999
1994	77		22		0.999999
2026			85	14	0.993533
2027		85	14		0.993533
2032	85	14			0.993533
2035	71	14			0.984337
2038	85		14		0.993533
2042	14	85			0.993533
2044	85		14		0.993533
2045	14		85		0.993533
2047	85		14		0.993533
2183	20	80			0.995493
2185			75	25	0.996473
2300		20		80	0.995493
2302	80			20	0.995493
2513		83		16	0.994512
2559	80		20		0.995493
2625			66	33	1.0
2710	83	16			0.994512
2711		16		83	0.994512
2712	83	16			0.994512
2715	20			80	0.995493
2716		80	20		0.995493
2717		80		20	0.995493
2718		80	20		0.995493
2722	80	20			0.995493
2723		20		80	0.995493
2725	20			80	0.995493
2726			20	80	0.995493
2727			20	80	0.995493
2732		20	80		0.995493
2736		20		80	0.995493
2805	75		25		0.996473
2806	75			25	0.996473
2807		75	25		0.996473
2811	25			75	0.996473
2812			25	75	0.996473
2815	33		66		0.997452
2816	33	66			0.997452
2817		66	33		0.997452
2818		66	33		0.997452
2821	33	66			0.997452
2823			33	66	0.997452
2825		33	66		0.997452
3008	83		16		0.994512
3009		16		83	0.994512
3011		83		16	0.994512
3012	16			83	0.994512
3211		14		85	0.993533
3326		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
325	339	TGG TGG TGG TGG TGG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain