SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2115

Length: 1530 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2115

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative copper-binding family protein n=1 Tax=Malus x domestica RepID=E4Z8N6_MALDO	-	-	6.0e-22	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	copper ion binding	-	-	1.00672e-25	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	1.00672e-25	75%
Blast2go	metal ion binding	GO:0046872	Molecular Function	1.00672e-25	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPH2

Fln msg: atg_distance in limit (1-15): atg_distance = 3, your sequence is longer than subject: 257 - 148

Fln protein: MSNHLERPLITEIQVRMDCNGCVQKIRRALQTLQGIYDVYIDFPQQKVTVVGWVDPDLLMKAIKKAGKRAKLCSHVRDEETADRADPAAASSSDPTTVTEQPANPATETVTEQTAGEQPPPPPAEQPPAEAAPADAPPPENADQPAAPAEPAPENPTPEPLPVPLDHTILIRNGLDGYQVAQEHLRDADYRYANEYYPRSYNVPEYADAQRRYNRRYMGGEQYYYTNGVPMRQNAADGNRFTSLFSDENPNACSIT*

Protein Length: 258

Fln nts: CTGTTCAGCTTATGGTTTTCTGCTAAATCGCTTCCGCAA_-_ATGTCGAACCATCTGGAGAGACCTCTTATAACTGAAATACAAGTCCGTATGGACTGTAACGGCTGCGTTCAGAAGATACGTAGAGCTCTGCAAACTCTTCAAGGCATTTATGACGTTTACATAGATTTCCCCCAACAAAAGGTGACAGTGGTAGGATGGGTTGATCCAGACCTATTAATGAAGGCCATAAAGAAAGCCGGGAAAAGAGCCAAACTGTGCAGCCACGTACGCGATGAAGAAACGGCCGACAGAGCCGACCCGGCGGCCGCTTCTTCCTCAGATCCGACAACCGTAACAGAGCAGCCCGCCAACCCAGCAACAGAAACGGTAACGGAGCAAACTGCCGGAGAGCAACCTCCGCCGCCACCAGCAGAGCAGCCGCCCGCTGAAGCAGCACCTGCCGATGCTCCGCCGCCAGAAAACGCAGACCAACCTGCTGCGCCAGCAGAGCCGGCGCCGGAAAATCCAACTCCGGAGCCACTCCCGGTTCCTCTCGACCACACAATTCTGATCCGAAACGGGCTGGATGGCTATCAGGTGGCGCAAGAACACTTGAGGGACGCAGATTATCGTTATGCCAATGAATATTATCCTAGGTCATATAATGTTCCCGAATATGCCGATGCCCAACGAAGGTATAATCGCAGATATATGGGTGGGGAACAGTATTACTACACTAATGGAGTTCCCATGAGGCAAAATGCAGCAGATGGCAACAGGTTCACCTCCCTGTTTAGCGATGAGAATCCAAATGCCTGCTCCATAACATAA___GCTCATAAAATCTCATCCTGCTTATGTTTGAATTGGAGAATTCAAATATTATGCTTATGATGATGGATTCAGGAATTACCTATATCTGAAATGTTTTTCTCCAACTTTTTTGTTCTGCTCCTAATAAATTTCAACTCTATCAAGAAGACACAATTGTAGGTTACTCTTAGTAATACAATCAAGATCCTTGTGCTGGCCAGAAATGGTTGGCTGATATGCATGGAAAGCTAAGATGCAGATCAGATTAGATTCCAGTTGTGACGATTTGGACATGTTATTCCAAGGGACAAGTAGTACCTACAAGAAGACAAGAATGTATCTATGCCCCACTGGATTGTTCTGACGTGAATGGAATCATATCCCATGCCATCACTTGAAATAATGGCGGACCAGGAAACGAATCATCTCTCTTTTTTGGTTCTCCAGTATTAATATATTAATGGTTGAAGCGAGAATCTCAAGTTTGTTGTATACCAGAACTTTTTGATATGCCTTCTGCGACAAGGAATTCTGTTCTTTGTATAAATTAAATAAAGCAGAATGGAATTCGACTTTGAGTGTATCACTTTTTTGACGAATGGATCGAGTATGTGGAAAGGTCATTTGTTCTTGAAGACTTTGATTCCTTTCAAAATGCAAACTCATATTTGTTCCCGAAGGCTTGATTCCATTCAAAATGCAAACTCATTGTTATTTGATGGGCAATACGAGATGAACTTT

Fln Alignment:

Contig2115___EIQVRMDCNGCVQKIRRALQTLQGIYDVYIDFPQQKVTVVGWVDPDLLMKAIKKAGKRAKLCSHV
B8LPH2______________ELKVRMDCDGCERKVRKALASMSGVQSVEIDRKLQKVTVTGYVEANKVLKKVKESGKRAELWPYV

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
434		83		16	0.999991
549	11		88		0.923564
775	90		10		0.90298
777		90	10		0.90298
879			42	57	1.0
951		83	16		0.994512
952	83		16		0.994512
953	83			16	0.994512
1021		85		14	0.993533
1066			16	83	0.999991
1067			16	83	0.999991
1214	33		66		1.0
1299	75			25	0.996473
1369			33	66	0.997452
1382			33	66	0.997452
1383			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain