SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2006

Length: 1775 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2006

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Diacylglycerol kinase, alpha, putative n=1 Tax=Ricinus communis RepID=B9T0H8_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	diacylglycerol kinase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Diacylglycerol kinase.	EC:2.7.1.107	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Glycerolipid metabolism	00561	73%
Blast2go	Glycerophospholipid metabolism	00564	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Phosphatidylinositol signaling system	04070	73%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	73%
Blast2go	leaf development	GO:0048366	Biological Process	73%
Blast2go	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	73%
Blast2go	diacylglycerol kinase activity	GO:0004143	Molecular Function	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Diacylglycerol kinase, plant	IPR016961	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTS1

Fln msg: your sequence is longer than subject: 493 - 33

Fln protein: MEESQAGASASSHVNGKQNAKLAHTAVKSTLMEPPGGLCLQGRSINTEELRRHTVIPEYLRNAMADAVRSKGFVYEERRHKGTGEECSPEAPVVVFINSKSGGRLGPKLRNQLQDLISQEQVFDLSVVKPEEFFQYGLHCLEELASNGDLCAQETRDRIRVLVAGGDGTVAWVLGSISGLQLEKCKQIPPVGIIPLGTGNDLARSFGWGGTFSFAWRSEVKKYLLKAVNSRVCPLDSWHVVVKITDGQKVDFPHALKPQKQSLVTQDGELDRKSHGNVSSFDGVFYNYFSIGMDAQVAYGFHHLRKKRPYLARGPISNKMVYSVYSCTQGWFCTSCSNNPQLSGINNILRLYIRRRNGSAWEEIAIPSSVRAIVALNLQNYASGRNPWGHPNPKYLEKKGFVQAQADDGLIEIFGLKNGWHTSFVMADLITAKHLSQAVDVKLELGGSQSKQAYMQMDGEPWKQPLSNIHSTVIEIARAPYQSLILNANSNK*

Protein Length: 494

Fln nts: ATGGGGAGACAATCTATGCCGAAGAGCCTTGACATTCCGTTCACCTTTATGCAGTGTCCTTTCTCACACTAACCATACGTTGATCCTCTGAAACGCCGCTATAGGGGGGTTAGTGCC_-_ATGGAAGAATCACAGGCAGGAGCTTCTGCTTCTTCGCATGTTAACGGCAAGCAAAATGCCAAGCTCGCCCACACGGCTGTCAAATCTACCTTAATGGAGCCTCCCGGAGGTCTTTGTCTGCAGGGGCGGAGCATAAACACAGAAGAATTACGGAGGCACACTGTGATTCCTGAGTATTTGAGAAATGCCATGGCCGATGCCGTTCGCTCAAAAGGATTTGTGTACGAAGAACGGCGTCATAAAGGGACTGGAGAAGAATGTTCACCGGAGGCTCCGGTTGTAGTCTTTATCAATTCAAAGAGTGGCGGTAGACTGGGACCAAAGCTTAGGAATCAGCTTCAGGATTTAATCAGCCAAGAACAGGTCTTTGACCTTTCAGTTGTTAAACCTGAAGAATTTTTTCAGTATGGTCTACATTGCTTGGAAGAACTGGCAAGCAATGGTGACCTTTGTGCACAGGAAACTCGTGATAGAATACGTGTTTTGGTAGCAGGAGGTGATGGTACTGTTGCATGGGTGCTAGGAAGTATATCTGGTCTTCAATTGGAAAAGTGTAAACAAATACCACCGGTGGGAATTATTCCTCTTGGCACAGGCAATGATTTGGCCAGATCTTTTGGCTGGGGTGGAACATTCTCTTTTGCATGGAGATCAGAAGTTAAGAAATATTTGCTCAAGGCTGTCAATAGTCGAGTATGTCCACTTGACAGTTGGCATGTTGTGGTGAAAATCACAGATGGACAAAAAGTAGATTTTCCTCATGCGTTGAAGCCCCAAAAGCAATCATTAGTAACTCAGGATGGGGAACTAGACCGCAAATCACATGGCAATGTTTCTTCTTTTGATGGTGTATTTTATAACTACTTCAGCATAGGCATGGATGCTCAAGTTGCATATGGATTTCATCATCTACGTAAGAAGAGACCATATCTTGCTCGGGGACCGATTTCAAATAAAATGGTCTACTCTGTCTACAGTTGCACTCAAGGGTGGTTCTGCACTTCTTGTTCAAATAATCCACAACTAAGTGGAATTAATAATATTTTACGACTTTACATTAGAAGGAGAAATGGATCTGCATGGGAAGAAATTGCTATTCCATCAAGTGTGCGGGCAATTGTTGCTTTGAATCTTCAGAATTATGCAAGTGGGCGAAATCCATGGGGACATCCAAACCCAAAGTACCTTGAAAAGAAAGGATTTGTACAGGCCCAGGCCGATGATGGATTGATTGAAATCTTTGGATTGAAGAATGGGTGGCATACATCCTTTGTCATGGCAGACCTTATTACAGCAAAGCACCTTTCACAGGCTGTAGATGTAAAGTTGGAATTGGGAGGGTCTCAGAGTAAGCAAGCCTATATGCAAATGGATGGTGAGCCTTGGAAACAACCACTAAGCAACATCCATTCAACAGTAATTGAGATTGCAAGAGCTCCTTATCAATCACTTATTCTTAATGCAAACTCAAATAAATAG___GCGGTTGTCCTTCAAATATATTATGAAATTATAACTATTTAACTGAATGGTATCCAAAGCATGCAGCCTTTTGCTTCTGCATATTGGATTACATCATTGCTTTGTGTTACTTATTCAAAATCAGCTTCTTGTTGATTTCATGTCTTTATCAAAAGAGTTGTTAGTTTTCACTTCAATCG

Fln Alignment:

Contig2006___MDGEPWKQPLSNIHSTVIEIARAPYQSLILN
C0PTS1______________MDGEPWQHPLSESDSTMIEITRVPFQSLMIS

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
146	20		80		0.995493
150	20	80			0.995493
152			20	80	0.995493
153		80	20		0.995493
155		80	20		0.995493
174	80		20		0.995493
196			20	80	0.995493
247			40	60	1.0
274		20	80		0.995493
464		75		25	0.996473
585	42		57		1.0
675	85	14			0.993533
677		85		14	0.993533
678	85			14	0.993533
734	14			85	0.993533
855	90			10	0.90298
857	22		77		0.999999
865	88			11	0.923564
866	11		88		0.923564
901	90		10		0.90298
933			90	10	0.90298
1007	12		87		0.992554
1009			12	87	0.992554
1010			87	12	0.992554
1028	14	85			0.993533
1153	14			85	0.993533
1154	85	14			0.993533
1157	85			14	0.993533
1189	12	25		62	1.0
1211			87	12	0.992554
1412			66	33	0.997452
1413		66		33	0.997452
1507	88		11		0.999952
1552	86	13			0.999973
1624	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain