SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2000

Length: 1357 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2000 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-amylase (Fragment) n=1 Tax=Prunus armeniaca RepID=Q9XH69_PRUAR	-	-	51%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	protein	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	64%
Blast2go	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: your sequence is shorter than subject: 282 - 492

Fln protein: GMKGMWKFPGVGEFQCYDKYMLANLKQHSEATGYPLWGLGGPHDAPSYSQWPNEGSFFNDNGGSWGSPYGEFFLTWYSAQLIAHGDRILSLAASIFLEDEVIVSGKLPAVHWWHKTKSHAAEVTAGFYNVEGRDGYDAFMEMFAKNASLVILPSMDVSEMYYPAEARCSPESVFLQIRRASHKHGVPVAGENSFPCHDNAAFKRITDNVHLRNSPDLPLLTSFTFKSMGASLFFPDHWHHFVKFFRKIGQYGLMDNQSDIALKEQPTTSSSFCNEEQLVKM*

Protein Length: 283

Fln nts: CGGAATGAAGGGTATGTGGAAATTCCCTGGAGTGGGAGAATTTCAATGCTATGATAAATATATGCTAGCCAACCTGAAGCAGCATTCTGAAGCGACAGGTTACCCTCTATGGGGACTGGGAGGTCCACATGATGCTCCATCATATAGTCAATGGCCCAATGAGGGAAGTTTCTTCAATGATAATGGTGGATCTTGGGGCTCCCCCTATGGAGAGTTTTTTCTTACATGGTATAGTGCACAACTGATTGCTCATGGAGATCGCATTCTTTCTCTAGCTGCAAGTATTTTCCTGGAGGATGAGGTAATAGTATCTGGAAAGCTTCCAGCAGTTCATTGGTGGCATAAAACGAAGTCACATGCAGCAGAAGTCACGGCTGGATTCTATAATGTAGAAGGTCGTGATGGGTATGATGCCTTCATGGAGATGTTTGCCAAAAACGCATCTTTAGTGATTTTGCCAAGCATGGATGTTTCAGAAATGTACTATCCTGCTGAAGCAAGATGTAGTCCAGAGTCAGTTTTCCTTCAGATTCGAAGAGCGAGTCATAAACATGGCGTGCCAGTTGCAGGCGAGAATTCATTTCCCTGCCATGACAATGCTGCTTTTAAGAGGATCACCGACAATGTCCATCTTAGAAACTCACCTGATCTCCCCCTTTTGACTTCTTTCACTTTTAAAAGTATGGGTGCATCTCTGTTCTTTCCAGACCACTGGCATCATTTTGTCAAGTTTTTCCGGAAAATTGGCCAATATGGCTTGATGGATAATCAGAGTGATATAGCATTGAAAGAGCAGCCAACGACGTCTTCCAGCTTCTGCAACGAGGAGCAGCTTGTTAAAATGTAA___GAATAGTTGCTAAACGTGATGATGGGAAGATGAAGTGTTTTATATTCCTTTCCTGTGTTTGTAAGATTACTCAGCCATACAACAGAAGTAAATTCAAACAAGTAAGTATGCCAACATAAGACTTATTTGTCAATTTTAGTGTAATTAACACTGGATTCTTGACTCTCCTGCTGCCGGGGAGATCTTCTGCTGTTACTATTAGATTTTCTATTAGACTCATTCTTTAGTATTTTGGTGAGATTGATTAAATTACTAAGACCATGATATGATATTTATTGTGAACCCTCTTGTTCTTAGTTTCTATCAAATTATATTCTGAGAGATCCCATCCCATGGCCCAATTTTAATCATGCTGTGATAATTCATGTGAATCAACAGCACTCGGTAAGCTGTTTACTAGAACTGATAATAATAAATCATTATAAGATTTGATCTTGGGTCTTGCCCAAAACAGTTTTCCTAAATTACTGTAAAATTATTAGACTTCATTGTTCTGAAAATTTCTCCAAT

Fln Alignment:

Contig2000___GMWKFPGVGEFQCYDKYMLANLKQHSEATGYPLWGLGGPHDAPSYSQWPNEGSFFNDNGGSWGSPYGEFFLTWYSAQLIAHGDRILSLAASIFLEDEVIVSGKLPAVHWWHKTKSHAAEVTAGFYNVEGRDGYDAFMEMFAKNASLVILPSMDVSEMYYPAEARCSPESVFLQIRRASHKHGVPVAGENSFPCHDNAAFKRITDNVHLRNSPDLP-----LLTSFTFKSMGASLFFPDHWHHFVKFFRKIGQYGLMDNQSD
A9NVE4______________GTWKFPGIGAFQCYDKYMLANLKATAETAGKKEWGCGGPTNAGYYNNWSEETEFFCSEGG-WNSPYGEFFLQWYSNMLLNHGERILAEAESIFHKSGARLSGKVAGIHWHYLTRSHAPELTAGYYNTGDRDGYLPIAQMFGRHGVVFIFTCIEMKDVEQPADAKCSPEKLIKQVIKATRKARIHLAGENALPRFDEAAYTQVLNNSCLRLEQDNPDDKIEPMCAFTYLRMSQHLFQSKNWSTFVSFVRRMSQQNAVSISRD

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1226		69		30	1.0
1245		27		72	1.0
1259	72		27		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain