SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1979

Length: 1298 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1979 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitochondrial carrier protein, putative	-	-	8.0e-10	27%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	31%
Blast2go	mitochondrial substrate carrier family protein c-like	-	-	1.72046e-13	46%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7TMD3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 542 aas, your sequence is shorter than subject: 245 - 829

Fln protein: MGLPVLRPDLAVYDSHPNTGNSSSPVEHFLSSVYAVKGALSPGGLESAIRGAAKDIELNFLMPKRKAHPKEKKMDGFKVKRKISDMSKDILCSVEESKKASFLKFPLKVVWGNIFYNAGTSPKTELAQNDFSQRDIDISQAQSPLVDEEKPCTNCFLTVITQTLLLGNFLQAIPNHFRSVKKCFGRHTCDTASAGCNTMEERDMDTEFAEKTCSQSSFQLLANEFSLRMRCDISTATSQLKEKK*

Protein Length: 246

Fln nts: TTCCGTCAGTTCATCTAATCTAATGGATGCTAGGACCTTGCTTACTCATTACATTTGCATACAGACCGTGTTAGTTTTGGAGGTTTGCTTTATTGTAGTGGGTCGTTGGATTCTCATGGACTTGTACAAATGTCAAAACTCCAGTACGATCTAGGTTAATTTTGTTACTTTATACGCAGAATATCAGAAGCGGGAAGTAGATTGGTATTTTTCTGAGTTTTGGGTTCTGCAGATTGAATTTGGGCGAACGGTTTTGGTTAATTGCAAGTAACAGCTTCAGCTCGAAAAGGTCAAGTAGGTTGTGTTAAGCTAAGAGTGTGCCTAAACTTTCAGTGGCATCTCTATTTTGATTAACAAGCTTTTAGGGCTGGTTTCTGGC_-_ATGGGGTTGCCGGTTTTGCGTCCAGACCTGGCGGTCTATGACTCCCACCCGAACACTGGAAATTCGAGCTCCCCTGTAGAGCATTTTCTCTCTTCTGTGTATGCGGTAAAAGGCGCTCTGTCGCCAGGGGGGCTCGAATCCGCGATTCGAGGGGCAGCAAAAGATATAGAATTAAACTTTTTGATGCCAAAGCGGAAAGCCCATCCGAAGGAGAAGAAAATGGATGGTTTCAAGGTCAAGAGGAAAATATCTGATATGTCTAAGGATATCCTGTGCTCCGTGGAAGAATCAAAGAAAGCTTCATTTCTGAAATTTCCACTCAAGGTTGTTTGGGGTAACATCTTCTACAATGCTGGTACGTCTCCGAAAACAGAATTGGCTCAAAATGATTTTTCGCAAAGAGATATTGACATTTCCCAAGCTCAGAGCCCTTTGGTTGATGAAGAGAAGCCCTGCACGAATTGTTTTCTAACTGTTATAACACAAACTCTTCTTTTGGGAAATTTCTTGCAAGCCATTCCAAACCATTTTAGATCTGTAAAGAAGTGCTTTGGAAGGCATACTTGTGATACTGCTAGTGCTGGTTGCAATACGATGGAAGAAAGAGATATGGATACTGAATTTGCCGAAAAAACATGTTCGCAATCATCCTTCCAGTTATTGGCAAATGAATTTTCTTTAAGAATGCGATGCGACATATCGACGGCAACATCACAATTAAAGGAGAAAAAGTGAACTCTACCAAGAAGGCAGAGGGTTTGTCATTTGAACTGTTTTTAAACCTCTTGTTGGAATACTGTCTTCAGAGTCAGCTAAAGCTGGAGCAGAAGCATGCCAAGATAAACGATCAGAGAGATAACAGTGGTACCGATGTTAGAACAGAACCAGAACAGTCTTCTGCCATGAATAAAAGTCACAA

Fln Alignment:

Contig1979___NSSSPVEHFLSSVYAVKGALSPGGLESAIRGAAKDIELNFLMPKRKAHPKEK---------------KMDGFKVKRKISDMSKDILCSV-EESKKASFLKFPLKVVWGNIFYNAGTSPKTELAQNDFSQRDIDISQAQSPLVDEEKPCTNCFLTVITQTLLLGNFLQAIPNHFRSVKKCF
D7TMD3______________SGNDPVESFFNSVQAVKDVLSP--LELGVRRAAKDLEHRW-WSKNEVNDAELFAELSGVGGVGDRNGKVQSCRVKKKNGQ------CVVTEERKKGLWIRIPIKNFWGMFLPNSANGYKDEVSRKGLTERDLG--------KEDDASCMNCLQFAVTWSLLVNNFVQSFPSHFKPAKKRF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
893	33		66		1.0
958	66	33			0.997452
961	66			33	0.997452
1069	80	20			0.995493
1070	80	20			0.995493
1071		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain