SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1773

Length: 1505 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1773 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	boron transporter 4 [Arabidopsis thaliana] sp\|Q9XI23.1\|BOR4_ARATH RecName: Full=Boron transporter 4 gb\|AAD39673.1\|AC007591_38 Is a member of the PF\|00955 Anion exchanger family [Arabidopsis thaliana] gb\|AAL47440.1\| At1g15460/T16N11_24 [Arabidopsis thalian	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	anion exchanger family protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	borate transport	GO:0046713	Biological Process	74%
Blast2go	cellular response to boron-containing substance levels	GO:0080029	Biological Process	74%
Blast2go	inorganic anion exchanger activity	GO:0005452	Molecular Function	74%
Blast2go	borate efflux transmembrane transporter activity	GO:0080139	Molecular Function	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	74%
Blast2go	integral to membrane	GO:0016021	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bicarbonate transporter, eukaryotic	IPR003020	-	0.0	-
Sma3	Bicarbonate transporter, C-terminal	IPR011531	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRN9

Fln msg: your sequence is shorter than subject: 289 - 671

Fln protein: VESAKKSIEEQASTLEIYGNMQEVFVKMEQKGPTSKDLNELKDLKAIVLRSTEDEKDGNAFDPDKHIEACLPVRVKEQRLSNLMQSLLVGGSVGLMPVIKKIPTSVLWGYFAYMAIESLPGNQFWERLLLLFIAPTRRYKVLEDLHASFVETVPFKTIALFTIFQFIYLLLCFGVTWIPIAGILFPIPFFLLIPIRQYILPKIFESKYMSELDAAEYEESAAFPRRDLSLSIRELDTPRTPRTPRTPRVNRVDSIKEFIGDAEILDELTTRSRGELKLRPVHIDSRDL*

Protein Length: 290

Fln nts: TGGTAGAAAGTGCAAAGAAAAGTATTGAAGAGCAAGCCAGTACATTAGAGATTTATGGCAACATGCAGGAAGTTTTTGTCAAAATGGAGCAGAAAGGGCCAACATCGAAGGATTTGAATGAACTGAAAGATTTGAAAGCAATAGTCTTGAGAAGTACAGAAGATGAAAAAGATGGAAATGCTTTTGACCCTGACAAGCATATTGAGGCATGTCTTCCAGTGAGAGTTAAGGAGCAACGACTGAGCAACTTGATGCAGTCCCTTCTTGTGGGTGGATCTGTGGGCCTCATGCCTGTAATAAAAAAGATTCCTACGTCTGTGCTATGGGGTTATTTTGCTTACATGGCAATAGAAAGTTTACCAGGAAATCAATTCTGGGAAAGGTTGCTTCTGCTTTTCATTGCTCCAACTCGGAGATACAAGGTTCTTGAGGATTTGCATGCATCATTTGTGGAAACAGTGCCATTTAAAACCATTGCACTCTTTACCATATTTCAGTTCATTTATTTGCTGTTATGTTTTGGGGTTACATGGATCCCAATAGCAGGGATACTTTTCCCTATCCCCTTCTTTTTGTTGATACCAATTAGACAATACATTCTTCCAAAGATCTTTGAATCAAAGTACATGTCAGAACTGGATGCAGCTGAGTACGAGGAAAGTGCGGCATTCCCCCGTCGTGACCTCAGCCTCTCAATTCGGGAGCTTGATACACCTCGAACACCCCGGACACCTCGAACACCTCGAGTAAACAGGGTGGATAGCATTAAGGAATTTATTGGTGACGCAGAAATCTTGGACGAACTAACTACCAGAAGTCGTGGTGAACTGAAACTTCGTCCTGTTCATATTGATTCTCGAGACTTATGA___AGTAGAAGATGCAATTGGGAAGTTTTGGGCTGTCCGTTGATACTTGTACAGAGTTTCCAGAGCTGCATGTGCGAGCAACCTAGAGAAATTTTGCATTGGCCTTTCTTTGCAAGAAGAGAAGCTACTGTGAAAAGAAAACAAATATAGATAAATACTGCGCATATGCCAATTTGTTTCCAAAAGCTACCTGTCAACAGCTTCTGCAATCACCATGAAAGGCAATCAAGTCAAACTACGATAATTGACAGGCACTGGTTATTTGTGGGTTGGATATTAATTCCATGTAATGCATAGCAAGTAAGCCCAAGGAAGAATTGTGTTTATGTCATATAGCTGTTGTTGTGCAAGTGTTCATAACTATTCTGGAGTAGAGCCACTTGGTCAATTATTGGTATACAGTATACTGTGGGCCATAGAGATCCACCGAGAGGATTTTATATCAGTATGATCTGGTTTGTAAGGTCTATGGAAACTTCTTTCGCCATTTTTAACATTTCCATTTAATTAGCTTTCATTTCGCTCAGTTGTTTCAGCATTGTTCGATACTTCAGTCAAAGTTTGAGGTACTTGTAAAACACAAGATTCATGAATTGAATATAGTCATATGGTTAGCTTTTTTCACGAGAGCTTTCTTAC

Fln Alignment:

Contig1773___VESAKKSIEEQASTLEIYGNMQEVFVKMEQKGPTSKDLNELKDLKAIVLRSTEDEKDGNAFDPDKHIEACLPVRVKEQRLSNLMQSLLVGGSVGLMPVIKKIPTSVLWGYFAYMAIESLPGNQFWERLLLLFIAPTRRYKVLEDLHASFVETVPFKTIALFTIFQFIYLLLCFGVTWXXXXXXXXXXXXXXXXXIRQYILPKIFESKYMSELDAAEYEESAAFPRRDLSLSIRELDXXXXXXXXXXXRVNRVDSIKEFIGDAEILDELTTRSRGELKLRPVHIDSRDL
B8LRN9______________VESAKKSIEEQASTLEIYGNMQEVFVKMEQKGPTSKDLNELKDLKAIVLRSKEDEKDGNAFDPEKHIEACLPVRVKEQRLSNLMQSLLVGGSVGLMPVIKKIPTSVLWGYFAYMAIESLPGNQFWERLLLLFIAPTRRYKVLEDLHASFVETVPFKTIALFTIFQFIYLLSCFGVTWIPIAGILFPIPFFLLIPIRQYILPKIFESKYMSELDAAEYEESAAFPRRDLSLSIRELDTPRTPRTPRTPRINRVDSIKEIIGDAEILDELTTRSRGELKLRPVHIDSRDL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
237	83		16		0.994512
291			16	83	0.994512
293	16	83			0.994512
397		80		20	0.995493
793	14			85	0.993533
795		14		85	0.993533
796	85			14	0.993533
798		85	14		0.993533
1102	83		16		1.0
1192		88		11	0.999952
1352		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain