SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1722

Length: 1129 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1722 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WS00721.B21_J23 WS-PS-N-A-8 Picea glauca cDNA clone WS00721_J23 3', mRNA sequence.	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQE7

Fln msg:

Fln protein: MPLRGCVLHSFGLDEKSAMGSWCRANNFTPVSCSTDFDSSGFCRRTRISNPSWITTKMHHRPRRLFLLATPTENGATQLNYDPGPLDNIFLFLFRKKMAKEAGWDSKKPGYDGLIEVANFLMMKYRNKLDTEQATVRILRSLFPPFLLLLFRKLIAPLAEGKPAAIITARVTAATCQWLMGRSTVNCIDLPDGSSCNSGVLVEKCRYLEASKCAGICIHTCKLPTQTFIKEYMGIPLLMEPNFSDFSCQFKFGVEALPACDDKSLHVPCLEICPNDVKHKGYQNSPNVQQCPKV*

Protein Length: 296

Fln nts: ATTTATTGTAACAACGAGGAGAGGAAGTCACTGAGTTCACACAAAGCTTATCTTAAATTAAACATACCAGTCGCGCAAA_-_ATGCCCCTTCGTGGTTGTGTTCTTCACTCGTTCGGACTTGACGAGAAGAGCGCAATGGGTTCATGGTGTCGAGCCAACAATTTTACTCCCGTTTCCTGCTCTACTGATTTTGACTCAAGTGGCTTCTGTCGCCGGACAAGAATTTCCAATCCCAGTTGGATCACAACTAAAATGCATCATCGTCCACGGAGATTATTCCTGTTAGCTACACCAACTGAAAATGGCGCGACGCAACTCAATTACGACCCTGGCCCTCTGGACAATATCTTTCTCTTTTTATTCAGGAAAAAAATGGCCAAGGAGGCTGGATGGGACTCGAAAAAACCTGGATATGATGGGTTGATTGAGGTTGCAAATTTCCTAATGATGAAGTATAGGAACAAACTGGACACTGAACAGGCCACGGTGAGAATACTAAGGTCATTATTTCCTCCCTTTTTGTTGCTGTTGTTTCGTAAGCTGATCGCACCATTAGCAGAAGGCAAGCCTGCTGCGATTATTACTGCACGGGTGACAGCAGCTACTTGTCAATGGCTTATGGGGCGTTCTACAGTCAATTGTATTGATCTCCCTGATGGATCCTCTTGTAATAGTGGGGTGTTAGTGGAGAAATGCCGGTATTTGGAAGCAAGCAAATGTGCAGGAATTTGCATTCATACTTGTAAACTGCCTACACAGACTTTTATCAAGGAGTATATGGGAATTCCACTTTTGATGGAGCCAAATTTCAGTGACTTCAGTTGTCAGTTCAAATTTGGAGTGGAGGCTCTTCCAGCTTGTGATGATAAATCACTACATGTTCCTTGCTTGGAGATATGTCCTAATGATGTCAAGCATAAAGGGTACCAAAATAGTCCAAATGTTCAACAATGCCCCAAAGTTTAA___TAGCTAAAATGGTTGATTTAAAATTATAGTAAGCATAAAGATAATGTCCCACCATTTTGAATGAATATATTTTGTTTATCATTAAAATATTACATATTGATGGGTACTTATTTATGTTGTTTTTGTCTATATCTTTGAACTTCATATATTGACCATTTTGATATC

Fln Alignment:

Contig1722___WCRANNFTPVSCSTDFDSSGFCRRTRISNPSWITTKMHHRPRRLFLLATPTENGATQLNYDPGPLDNIFLFLFRKKMAKEAGWDSKKPGYDGLIEVANFLMMKYRNKLDTEQATVXXXXXXXXXXXXXXXXXXXXXXAEGKPXXXXXXXXXXXTCQWLMGRSTVNCIDLPDGSSCNSGVLVEKCRYLEASKCAGICIHTCKLPTQTFIKEYMGIPLLMEPNFSDFSCQFKFGVEALPACDDKSLHVPCLEICPNDVKHKGYQNSPNVQQCPKV
A9NQE7______________WCQANNFTPISSSIDFGSSSFFRPTRISNPNWITTKMHRRPRRSFLLATPTENGATQLNYEPGPLDNIFLFLFRKKMAKEVGWDSNKPGYDGLIEVANCLMTKYRNKLDTEQATVRILRSLFPPFLLLLFRKLITPLAEGKLAAIMTARVTAATCQWLMGRSTVNCIDLPDGSSCNSGVLVEKCQYLEASKCAGICIHTCKLPTQTFIKEYMGIPLLMEPNFNDFSCQFKFGVEALPTCDDKSLHVPCLEICPNDVKRKGYQNRLDVQQCPKV

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1030	84	15			0.999986
1034	15	84			0.999986
1035	84		15		0.999986
1036	84		15		0.999986
1037		84		15	0.999986
1043	81	18			0.999994
1045	22		77		0.999999
1050			12	87	0.992554
1051		12		87	0.992554
1052		12		87	0.992554
1053	12			87	0.992554
1056	12		87		0.992554
1058			75	25	1.0
1061			12	87	0.992554
1064		14		85	0.993533
1065	85	14			0.993533
1066		14		85	0.993533
1067	14		85		0.993533
1068	14			85	0.993533
1108		20		80	0.995493
1111		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain