SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1719

Length: 1085 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1719

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase-like protein [Arabidopsis thaliana] sp\|Q9SAH3.1\|Y1887_ARATH RecName: Full=Putative receptor-like protein kinase At1g80870 gb\|AAF14675.1\|AC011713_23 Contains similarity to gb\|U82481 KI domain interacting kinase 1 from Zea mays and contains P	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
550			75	25	0.996473
551	75		25		0.996473
553	75		25		0.996473
565		20	80		0.995493
571	20	80			0.995493
576	80			20	0.995493
578	80		20		0.995493
579	80	20			0.995493
580		16		83	0.994512
584	16			83	0.994512
585		83	16		0.994512
586	83			16	0.994512
588	16	83			0.994512
592			20	80	0.995493
593		80	20		0.995493
597		80	20		0.995493
599		20		80	0.995493
600	20		80		0.995493
602	80			20	0.995493
603		20	80		0.995493
635			80	20	0.995493
681			16	83	0.994512
682			83	16	0.994512
684			16	83	0.994512
689	83			16	0.994512
690			16	83	0.994512
691			16	83	0.994512
695		83		16	0.994512
696	83	16			0.994512
698		16		83	0.994512
700		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain