SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1708

Length: 780 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1708 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative chloroplast nucleoid DNA-binding protein [Arabidopsis thaliana]	-	-	2.0e-20	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	aspartic proteinase nepenthesin-1-like	-	-	0.0	61%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	0.0	61%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	0.0	61%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
383			11	88	0.999937
619	77		22		0.999999
620	77			22	0.999999
621		66	22	11	0.999999
622	88		11		0.923564
625		25		75	1.0
627			28	71	1.0
629	71	28			1.0
634			71	28	1.0
635	71	28			1.0
636	28		71		1.0
638	71		28		1.0
726	66			33	0.997452
727		66	33		0.997452
732	33	66			0.997452
734	33			66	0.997452
736	66	33			0.997452
737	66	33			0.997452
738	33			66	0.997452
739	33	66			0.997452
741	66		33		0.997452
742		66		33	0.997452
745		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain