SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1629

Length: 1786 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1629 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	60%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast fission	GO:0010020	Biological Process	0.0	65%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7UDD7

Fln msg: your sequence is longer than subject: 409 - 335

Fln protein: MAATISSIPLNYQSTQFGEITGTKRYFGCRHPSLSFRDSIWGLSIQLHTDLCCSSGRGVKLRTHIEGKVSNSAHLLLNRSASIVYDASSELKSKFTRVFQGHGSAKRCIQEAIAPLEPVLSKLNRDIPVKFAVGLGMVVVFMVIAVKRYMASQSGDSGRGSVSDLVKRGQLRSDRRSISRPLKYDDPFNNPLVRAGKKNSIVKICGKVFRLTPVTLTEEKALNHQNRRVRAYQWKRPTLFLKEGDPIPPGIDPDTVRWIPANHPFATANNDIDEDFAQKNIYQKRGAPSRVREEHEALHRKMMMEAKQNEQKFNAMAEYAGFSGNPNNPSVSSEKTSGYPGDKVYHGDNRIENSNGELNGFQTPEEKTVQDPHLQSSSHTAKILDDSESHRLSKTPVQEVHPNELLNN*

Protein Length: 410

Fln nts: ATGGGGAATTCCATTCATTCGAAAAACAATCCTTACCACAAGAAATCCAAAGCAGACGAGTCTTGCGGCTGTTGCAAACTTTGCTACACTCAACATCAATGAAGTTGAAGCAGATCCCAACCATTCCTGTTGTCTGTGTCATCACTCAAATGCCTCAAATGCTAGATACGGCGAGAAGGATGAGTTAAAGGAAGTGCA_-_ATGGCTGCAACCATCTCCTCTATTCCCCTCAATTACCAGTCTACACAGTTTGGCGAAATAACAGGAACAAAGAGATACTTTGGATGCCGCCACCCGTCCTTGTCTTTCAGAGATTCTATTTGGGGTCTCAGCATCCAATTGCACACTGACTTATGCTGTTCAAGTGGCCGCGGAGTTAAATTGAGAACCCATATCGAGGGAAAAGTCTCGAATTCGGCGCACTTGCTGCTGAACAGATCCGCGTCCATTGTTTATGATGCTTCTTCAGAGTTAAAATCAAAGTTTACAAGGGTATTTCAAGGCCATGGTTCAGCAAAACGATGTATACAGGAGGCAATTGCGCCCCTGGAACCTGTTTTGTCAAAGCTGAACAGAGACATTCCTGTGAAGTTTGCAGTAGGATTGGGTATGGTTGTTGTATTTATGGTGATTGCAGTAAAAAGATACATGGCTAGTCAGTCTGGTGATAGTGGACGTGGTTCTGTGTCAGATCTTGTAAAAAGGGGCCAGCTAAGATCAGATAGAAGAAGCATTTCTAGGCCCCTGAAGTATGATGATCCTTTCAACAATCCATTGGTGAGAGCTGGTAAAAAGAATTCAATTGTAAAAATATGTGGGAAGGTCTTCCGTTTAACACCTGTTACTCTGACTGAAGAAAAGGCATTGAATCATCAAAATAGGCGTGTCCGGGCATACCAATGGAAAAGACCAACCCTGTTTTTGAAGGAAGGGGACCCTATACCACCAGGCATTGATCCAGACACAGTCAGATGGATCCCTGCAAATCATCCATTTGCAACTGCTAACAATGATATTGATGAAGACTTTGCACAGAAAAACATTTACCAGAAGCGTGGTGCACCTTCACGTGTTAGAGAAGAACATGAAGCATTGCATAGGAAGATGATGATGGAAGCCAAACAGAATGAACAGAAATTTAATGCTATGGCTGAATATGCTGGTTTCAGTGGAAACCCAAACAATCCCTCTGTCTCTTCGGAGAAAACAAGTGGCTACCCTGGTGACAAGGTTTATCATGGAGATAATAGGATTGAAAATTCAAATGGAGAATTAAATGGATTTCAAACTCCCGAGGAAAAGACAGTTCAGGATCCTCACTTACAATCCTCGTCTCATACTGCGAAGATATTGGATGATTCAGAGAGTCACAGGCTATCCAAAACTCCGGTTCAGGAAGTTCACCCCAACGAGTTGCTTAACAATTGA___GTTTATATACTTTGAAGTATCATTTTCATGCTGCAGATGTAATCATGCAACAAAGTAGTCTTCTTTTATTCTGATCAACCCTTAGTGTGGTAGCAGATCAGAATATTACACGTTCAAGTCATCCGACCTCATTTCTAAATATATGTAAAGCATAACTGGTTTCGGTAGCTGAAATCTCTGTACATTTTATCGTAGTATATTTTTTAGGAGTGAGTTCATGGTTGCTGGATGGTGTGCACAAATTTTCAGGCTGTGGGCATTCTCTATATTCGGTATTTGTCATTGTATGCTTTCAACCTTGACTATGAATCAATGAAATTACTCCAAACCATTCGACTTTATTTATTCAATCACTGAACCA

Fln Alignment:

Contig1629___IQEAIAPLEPVLSKLNRDIPVKFAVGLGMVVVFMVIAVKRYMASQSGDSGRGSVSDLVKRGQLRSDRRSISRPLKYDDPFNNPLVRAGKKNSIVKICGKVFRLTPVTLTEEKALNHQNRRVRAYQWKRPTLFLKEXXXXXXXXXXDTVRWIPANHPFATANNDIDEDFAQKNIYQKRGAPSRVREEHEALHRKMMMEAKQNEQKFNAM
D7UDD7______________LQETIKSFPPVVFVMKKDVGINFAIGLCVATTILVVAVRVYVARKVSSSRPGSVADLVRRGQLRSDRRGISSPLKYEDPFNNPLVKVGKSNSTVEMCGKVYRLAPVTLTKEQQAIHQKRRSRAYQWKRPTMFLKEGDSIPSDVDPDTVRWIPANHPFATTASEIDEGLAQNNVYQKHGVPFRIQAEHEALQRK--LEALQSEQKLNKL

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
683		88		11	0.923564
736	25		75		1.0
1215		66		33	1.0
1263	83			16	0.994512
1289		20		80	0.995493
1290		20		80	0.995493
1291		20	80		0.995493
1293	80			20	0.995493
1401	20		80		0.995493
1402			20	80	0.995493
1404		80	20		0.995493
1405	20			80	0.995493
1408	80		20		0.995493
1409		20		80	0.995493
1410		40		60	1.0
1411	20			80	0.995493
1413	60		20	20	0.99255
1414		80	20		0.995493
1499		60	40		1.0
1711	16			83	0.994512
1713		83		16	0.994512
1714	83		16		0.994512
1721		16	66		0.988813
1722	16	83			0.994512
1724	66		16	16	0.988813
1726	80			20	0.995493
1728	20			80	0.995493
1731	20			80	0.995493
1753	75	25			0.996473
1754	75	25			0.996473
1755		33	66		0.997452
1756		33	66		0.997452
1766	33			66	0.997452
1770	66		33		0.997452
1778	66	33			0.997452
1782	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain