SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1557

Length: 1790 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1557

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF936 domain containing protein	-	-	2.94273e-44	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	protein	-	-	0.0	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF936, plant	IPR010341	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACT5

Fln msg: your sequence is longer than subject: 504 - 127

Fln protein: MTDQPENPRALRKSWEEPILALKEQKEKCSAKNKVDLKSALRTQVALSRRLSDAKGETQMKQEDIGIKDASENAKAVALNKASGVSPTKRSSVDKSSHKIPQITIHDKKWTDSSVPWDSISVNLSELGQEALKRRNIASIAAAEALQEASAAEAVIRGLSMFSELCSSAKTNNPHPSIDRFFEIHPTLLQSVTVVESLAANRTADKDKDIPHADGLADDLNISTEKAKSAVQWIGAALATDLASISIFSKYGFNYSFKNSPNKGTSNVVLQNNQQAITSEDPSAAQAFKNQAFPYSVSSRRSTPASPDNKVQARVALSSVAQTNSDRRRSISDKGDFRSAVPLVTSAMKRQSLGTPVKPNNIKAASKVSSDAPSKGTGIEWIKGNGVNETMDLARHLQQEAQSWFLKFIEDVLDAGFHVENADSDNATTAKTQSQQDSSQIAAMLSQLKKVNDWLDQLGHKKEDMPDTKLVENIDRLKSKIYGFLLRHVESAASALDNHACGF*

Protein Length: 505

Fln nts: TGGAGGAGAGCTCTTCAGCCCTCGCCAGTTGGCAGGAGGACTTCGATATCTCCTGGAAGAAGGATTTCTGCTGGTAAATTGTCTCCAGCTATCAGGGATTGTGGTAAGAAGAAATCGGTGGTCAGTGGATCGAGGGCG_-_ATGACGGACCAGCCTGAGAATCCTAGGGCCTTGCGTAAAAGCTGGGAAGAGCCCATCCTGGCATTGAAGGAGCAGAAGGAGAAGTGTTCCGCCAAGAACAAAGTTGACCTTAAATCAGCATTGCGCACTCAGGTTGCTCTCTCTCGTAGGTTAAGTGATGCTAAAGGAGAAACACAGATGAAGCAAGAAGATATCGGTATAAAGGATGCATCTGAAAATGCCAAGGCTGTAGCTCTAAACAAAGCTTCCGGTGTATCACCAACCAAGAGATCTTCAGTTGATAAGTCAAGCCACAAGATACCACAAATTACAATTCATGATAAGAAATGGACAGACTCAAGTGTCCCTTGGGATTCTATTTCTGTGAACCTATCTGAACTTGGACAGGAGGCTCTGAAAAGACGGAACATTGCTTCCATAGCTGCAGCAGAAGCGCTGCAAGAAGCCTCTGCTGCTGAAGCTGTCATTCGAGGATTGAGTATGTTTTCTGAGCTATGCTCTTCTGCTAAGACGAATAATCCCCATCCTTCAATTGATCGGTTCTTTGAGATCCATCCAACGCTTTTGCAGTCAGTGACTGTTGTTGAATCCCTAGCTGCAAACAGGACTGCAGATAAAGATAAGGACATTCCACATGCTGATGGATTAGCCGATGACCTCAATATTTCAACGGAAAAAGCGAAGAGTGCAGTGCAATGGATTGGTGCTGCATTAGCAACGGACTTGGCATCCATATCCATATTTAGCAAATATGGATTTAACTATTCTTTCAAGAACTCCCCAAACAAAGGGACGTCAAATGTAGTCCTTCAAAACAACCAGCAGGCTATTACATCAGAGGATCCTTCCGCTGCACAGGCATTCAAGAATCAAGCTTTCCCGTACTCTGTGTCTTCCAGAAGGTCCACTCCTGCATCCCCCGATAACAAAGTTCAGGCTAGGGTTGCATTGTCATCTGTAGCTCAGACAAATAGTGATAGAAGGCGTAGCATTTCTGATAAAGGAGATTTTAGATCAGCTGTTCCTTTGGTGACCAGTGCAATGAAGCGCCAGTCTCTTGGCACACCTGTAAAGCCCAACAACATAAAAGCTGCGAGTAAAGTTTCTTCAGACGCACCTTCAAAAGGTACCGGCATTGAATGGATAAAAGGAAATGGAGTAAACGAGACAATGGATCTGGCTAGGCATCTCCAACAGGAAGCACAGAGCTGGTTTTTGAAATTTATAGAGGATGTATTGGATGCTGGGTTTCATGTGGAAAACGCAGATTCTGACAATGCCACTACGGCCAAAACTCAGTCGCAGCAAGATAGCAGCCAAATTGCAGCAATGCTATCTCAACTTAAAAAGGTTAACGACTGGCTAGATCAGCTTGGGCATAAAAAGGAAGATATGCCAGACACCAAGTTGGTAGAAAACATTGATCGTTTGAAGAGCAAAATTTATGGTTTTCTGCTTCGGCATGTTGAGTCTGCTGCTTCTGCTCTTGATAACCATGCATGTGGTTTCTAA___GCAGGTCTGTTTCTGTATCAAATTTCTCGCTGATAGTTAATTACGAATTTAGTGGTTCTTGAGATTTTCACGAACCAAAATAAATAGTAAATCTTGTAAAGGCTTTGTAACTGCAGAGGATCCTTTCTATGAGATTTTGT

Fln Alignment:

Contig1557___WIKGNGVNETMDLARHLQQEAQSWFLKFIEDVLDAGFHV-ENADSDNATT-AKTQSQQDSSQIAAMLSQLKKVNDWLDQLGHKKEDMPDTKLVENIDRLKSKIYGFLLRHVESAASALDNHA
D5ACT5______________WVKGNGVNDTVELSKLLHKEATEWFLEFIERALDAGFHTSKEKEGDTADSIAKSQSQKDKSQIAAMLSQLKKANDWLDQLGKNQGDDERSKMVEIVDRLKQKIYAFLMQHVESAACALDNQA

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
362	33			66	0.997452
389		66		33	0.997452
441			66	33	0.997452
456	33			66	0.997452
522	87		12		0.992554
673	14			85	0.993533
674			14	85	0.993533
675		85		14	0.993533
676	85		14		0.993533
678			14	85	0.993533
682		11		88	0.923564
683	11	88			0.923564
686		11		88	0.923564
689	11			88	0.923564
690		11		88	0.923564
697		88	11		0.923564
729		80		20	0.995493
747	20		80		0.995493
754		80		20	0.995493
778	50			50	1.0
793	25		75		0.996473
884	25		75		0.996473
1429	40		60		1.0
1438			71	28	1.0
1440		71	28		1.0
1441	71			28	1.0
1442	71		28		1.0
1444	71	28			1.0
1447		71		28	1.0
1448	71		28		1.0
1450		28		71	1.0
1451		71		28	1.0
1458	71			28	1.0
1459	71	28			1.0
1512			83	16	0.994512
1540	85			14	0.993533
1542	85		14		0.993533
1543			14	85	0.993533
1547		57	42		1.0
1553	71		28		1.0
1585	87	12			0.992554
1587	87			12	0.992554
1590		87		12	0.992554
1591	87		12		0.992554
1593	87	12			0.992554
1594	87	12			0.992554
1597			12	87	0.992554
1598	87		12		0.992554
1599		12		87	0.992554
1600			87	12	0.992554
1603		12		87	0.992554
1604	12			87	0.992554
1653	33	58	8		1.0
1710	33		66		1.0
1730		44		55	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain