SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1394

Length: 2164 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene1394
ATGGGGATATTACAATGCGATTGATCACATTTTCATTTTCAGTCACAAACTTGTCAAGCTCCATTTAAATCATTCGTCGTGACCTTGGCTGTCACTCAGTGTCAAGAGAGGCATTGTTTACTGTATTCTGCGAGAGAAGAAGGAAAGGGAAAGTGATGGGCGATCTTAGCAGAAGGGCAACAGATCACGCATTGCGATGTTGGAGCAATCTCACCAAACGCCTCCGCTTCGGATTGCAAAATCTATTCAAAGCTTCATTCTTGTATGTCTTTGGCAGAAGCGGAAGAAGGCGAAAGCGCAGTCTTCCTTTACCTTCGCCATCGAGACATTTGCCTTCCACCATATCATCGATGAAGGTGGTGGATAAAGCTACTGAGCTACTAGAGGAAACTTCTGAACAGATCTTATCAAACTTACATGATGTGCAAAAGAACTTGCTTTTTTGGCAATCACGGGCAGAGGGTACATATTCTCAAAAAGTGCATTTTATGGTTTTTGAAAGAGGGCCATTGGCATTTGTTGAAGGTACCATAGACCTGGTGCGTAGGTTCATTACTGAGGGTTCTCCCATGCAGCGTCTGGCTAATGCTGCTGCTTTTGAAATTTCCGAAAGAGTTACAATTCTGACAACTGTACAGAGGAATCTTGCAACGCTTCTTGCCGAGATTCACAAGGAGATTGCTAGTTTTAGAGAAGAGGTTGTTAAAGAATTCAATCGGAAGGCAATGTCTTCTGTGCTGGTTGCTATTCGCAAAGCTATGGTTGGATTGGAAAATATACCTCTTCCTCAGAGTGATTACTCTCCTGTTAATGATGGAACTCAAAATGTTGGTTTTCAATTTGAGGAATTGCCTGAGGGACTTCAGGACAAATCTGAGTGGACAGATGCCGAGATGCAGCTTGCTGTTGACCTGATATATTCTAATCTCAAGACACTCAATCAATGCTTGTCTCAAATTGTTTCAAAGTGTAGGAGGCCGAGGAGGGCAGAAAGGTTGTGGCTACGATATATGGGAACTGTAGTTGGCCTTGCATTTTGTTCAGCATGGCTGTTACGGCATAGCAGGTTGATGGGCAGTACTGATCTTGATGACTGGATCAGCGAAGGCAGAGATTCTATCATTGCATTTTGGAAAGAACATGTTGAGCTACCGCTTCTGTCAATCAGGAATGAGCTGTTTGAGACATTCAGAAGACGTCATAAGGGTGTAGTGGAACCTGAAGAAGTACAGTTGACGGCAAATTCACTCCATAGAATGCTACTGGATTTTACCAAACATACAACTAGGGGAAAGGTTCCTGAAGGAGCATCCGAACAAGAAATGATGGAAATAGTGATGGCAAGGTATGAGAAGGAGGTTATCAATCCTCTTCAAAACCTTGTCGGGGGAGAGCTTGCTCGAGCTTTACTTATTCAGATACAAAAGTTGAAGCTTGATATTGAAACGGCAATGCTTGAGATGGATCAGATTCTCAAGGCAAATGAAATTAACTTTGCAATGCTCGCTGCTTTGCCAGCACTTTTCATTACTGTCATTTTGGCATCCATAGTGCGATTGTGGTTGATGAAGGACAAAGGAGCAGAGGGCAGTGGAAGAGCTGCTAGACTCCAAAGGAGGCTACTCCTAGTAGACGCAGAAAGAAAGATAATCGAATACCAAGTGCTTATGGATCGACAGGAGGAAAATGCTATCTGGACTTTTGGAATGATACTTTATACACTTGACCGCTTGTATAAGGCCACAGAAAGGCATGCAAGCGCAACTGGTGAATGGCAAAGTTTGCGTGCAGATATTCTTGATTTGGCAAATCCAAGGCTTGCTGCGCACTATAAGCTTGCAATCACAGCCCGAATGACACGTGTATATGAATGCCTCCTTCCTTTGTCAAGAGGATTGTTGTGATGTGTTCTGTAGAAAGCAATACTTCAATTCTATTGTTCGTCAATATGAATTTTGATCTTTCTCCTTCACGAAATTATTACTGGTTAAAATTTTTTGGATCATTCTGGCGGTTTGCTTCTACGCTTTCTGACACAAATGGAGCATCCTTGTGATTGCCACTTATCTAGTATTTTGATATTCACAAAAATATCTCCTTTCAGTTGATGAGCAGTAAAATTTCCGTGGTATGATTAATGTTAAAAGACTGAACTAATGATCAT

Ace file of the UniGene sp_v2.0_unigene1394

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dgd1 suppressor 1 [Arabidopsis thaliana] gb\|AAO00810.1\| putative protein [Arabidopsis thaliana] gb\|AAP37724.1\| At5g12290 [Arabidopsis thaliana] gb\|AED91788.1\| dgd1 suppressor 1 [Arabidopsis thaliana]	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	55%
Blast2go	nuclear control of atpase protein	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	galactolipid biosynthetic process	GO:0019375	Biological Process	68%
Blast2go	hydrogen peroxide biosynthetic process	GO:0050665	Biological Process	68%
Blast2go	protein complex	GO:0043234	Cellular Component	68%
Blast2go	mitochondrial outer membrane	GO:0005741	Cellular Component	68%
Blast2go	plastid	GO:0009536	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Nuclear control of ATP synthase 2	IPR013946	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HAF6

Fln msg: your sequence is longer than subject: 583 - 518

Fln protein: MGDLSRRATDHALRCWSNLTKRLRFGLQNLFKASFLYVFGRSGRRRKRSLPLPSPSRHLPSTISSMKVVDKATELLEETSEQILSNLHDVQKNLLFWQSRAEGTYSQKVHFMVFERGPLAFVEGTIDLVRRFITEGSPMQRLANAAAFEISERVTILTTVQRNLATLLAEIHKEIASFREEVVKEFNRKAMSSVLVAIRKAMVGLENIPLPQSDYSPVNDGTQNVGFQFEELPEGLQDKSEWTDAEMQLAVDLIYSNLKTLNQCLSQIVSKCRRPRRAERLWLRYMGTVVGLAFCSAWLLRHSRLMGSTDLDDWISEGRDSIIAFWKEHVELPLLSIRNELFETFRRRHKGVVEPEEVQLTANSLHRMLLDFTKHTTRGKVPEGASEQEMMEIVMARYEKEVINPLQNLVGGELARALLIQIQKLKLDIETAMLEMDQILKANEINFAMLAALPALFITVILASIVRLWLMKDKGAEGSGRAARLQRRLLLVDAERKIIEYQVLMDRQEENAIWTFGMILYTLDRLYKATERHASATGEWQSLRADILDLANPRLAAHYKLAITARMTRVYECLLPLSRGLL*

Protein Length: 584

Fln nts: ATGGGGATATTACAATGCGATTGATCACATTTTCATTTTCAGTCACAAACTTGTCAAGCTCCATTTAAATCATTCGTCGTGACCTTGGCTGTCACTCAGTGTCAAGAGAGGCATTGTTTACTGTATTCTGCGAGAGAAGAAGGAAAGGGAAAGTG_-_ATGGGCGATCTTAGCAGAAGGGCAACAGATCACGCATTGCGATGTTGGAGCAATCTCACCAAACGCCTCCGCTTCGGATTGCAAAATCTATTCAAAGCTTCATTCTTGTATGTCTTTGGCAGAAGCGGAAGAAGGCGAAAGCGCAGTCTTCCTTTACCTTCGCCATCGAGACATTTGCCTTCCACCATATCATCGATGAAGGTGGTGGATAAAGCTACTGAGCTACTAGAGGAAACTTCTGAACAGATCTTATCAAACTTACATGATGTGCAAAAGAACTTGCTTTTTTGGCAATCACGGGCAGAGGGTACATATTCTCAAAAAGTGCATTTTATGGTTTTTGAAAGAGGGCCATTGGCATTTGTTGAAGGTACCATAGACCTGGTGCGTAGGTTCATTACTGAGGGTTCTCCCATGCAGCGTCTGGCTAATGCTGCTGCTTTTGAAATTTCCGAAAGAGTTACAATTCTGACAACTGTACAGAGGAATCTTGCAACGCTTCTTGCCGAGATTCACAAGGAGATTGCTAGTTTTAGAGAAGAGGTTGTTAAAGAATTCAATCGGAAGGCAATGTCTTCTGTGCTGGTTGCTATTCGCAAAGCTATGGTTGGATTGGAAAATATACCTCTTCCTCAGAGTGATTACTCTCCTGTTAATGATGGAACTCAAAATGTTGGTTTTCAATTTGAGGAATTGCCTGAGGGACTTCAGGACAAATCTGAGTGGACAGATGCCGAGATGCAGCTTGCTGTTGACCTGATATATTCTAATCTCAAGACACTCAATCAATGCTTGTCTCAAATTGTTTCAAAGTGTAGGAGGCCGAGGAGGGCAGAAAGGTTGTGGCTACGATATATGGGAACTGTAGTTGGCCTTGCATTTTGTTCAGCATGGCTGTTACGGCATAGCAGGTTGATGGGCAGTACTGATCTTGATGACTGGATCAGCGAAGGCAGAGATTCTATCATTGCATTTTGGAAAGAACATGTTGAGCTACCGCTTCTGTCAATCAGGAATGAGCTGTTTGAGACATTCAGAAGACGTCATAAGGGTGTAGTGGAACCTGAAGAAGTACAGTTGACGGCAAATTCACTCCATAGAATGCTACTGGATTTTACCAAACATACAACTAGGGGAAAGGTTCCTGAAGGAGCATCCGAACAAGAAATGATGGAAATAGTGATGGCAAGGTATGAGAAGGAGGTTATCAATCCTCTTCAAAACCTTGTCGGGGGAGAGCTTGCTCGAGCTTTACTTATTCAGATACAAAAGTTGAAGCTTGATATTGAAACGGCAATGCTTGAGATGGATCAGATTCTCAAGGCAAATGAAATTAACTTTGCAATGCTCGCTGCTTTGCCAGCACTTTTCATTACTGTCATTTTGGCATCCATAGTGCGATTGTGGTTGATGAAGGACAAAGGAGCAGAGGGCAGTGGAAGAGCTGCTAGACTCCAAAGGAGGCTACTCCTAGTAGACGCAGAAAGAAAGATAATCGAATACCAAGTGCTTATGGATCGACAGGAGGAAAATGCTATCTGGACTTTTGGAATGATACTTTATACACTTGACCGCTTGTATAAGGCCACAGAAAGGCATGCAAGCGCAACTGGTGAATGGCAAAGTTTGCGTGCAGATATTCTTGATTTGGCAAATCCAAGGCTTGCTGCGCACTATAAGCTTGCAATCACAGCCCGAATGACACGTGTATATGAATGCCTCCTTCCTTTGTCAAGAGGATTGTTGTGA___TGTGTTCTGTAGAAAGCAATACTTCAATTCTATTGTTCGTCAATATGAATTTTGATCTTTCTCCTTCACGAAATTATTACTGGTTAAAATTTTTTGGATCATTCTGGCGGTTTGCTTCTACGCTTTCTGACACAAATGGAGCATCCTTGTGATTGCCACTTATCTAGTATTTTGATATTCACAAAAATATCTCCTTTCAGTTGATGAGCAGTAAAATTTCCGTGGTATGATTAATGTTAAAAGACTGAACTAATGATCAT

Fln Alignment:

Contig1394___ELLEETSEQILSNLHDVQKNLLFWQSRAEGTYSQKVHFMVFERGPLAFVEGTIDLVRRFITEGSPMQRLANAAAFEISERVTILTTVQRNLATLLAEIHKEIASFREEVVKEFNRKAMSSVLVAIRKAMVGLENI-----PLPQSDYSPVNDGTQNVGFQFEELPEGLQDKSEWTDAEMQLAVDLIYSNLKTLNQCLSQIVSKCXXXXXXXXXXXXYMGTVVGLAFCSAWLLRHSRLMGSTDLDDWISEGRDSIIAFWKEHVELPLLSIRNELFETFRRRHKGVVEPEEVQLTANSLHRMLLDFTKHTTRGKVPEGASEQEMMEIVMARYEKEVINPLQNLVGGELARAXXXXXXXXXXDIETAMLEMDQILKANEINFAMLAALPALFITVILASIVRLWLMKDKGAEGSGXXXXXXXXXXXVDAERKIIEYQVLMDR-QEENAIWTFGMILYTLDRLYKATERHASATGEWQSLRADILDLANPRLAAHYKLAITARMTRVYECLLP
F6HAF6______________DVLEDILEHLFLNLHNIQKNLQFWQSRAEESNARKAYFMIFERGPRAFITRTVQFIRESVAQGSSLQLLSQSASAHISERITILTSLRYSLATFLAQVHIDIDKFGEELVND-PEKSLSSLLVTINGLFSKLEAAIGHLHATRQSDSSV--DGSYSFPLVFEKLPDVNQEGSQWTDCEIRDAINLIYQNLYKLDSYLSILVSKHRKPRKLTLYWIHYTCGAVGLSVCSVWLLRHSSLMGSNDIENWVREARDSTITFWNDHVEQPILSIRDELFETFRKRHRSVMELEDVQLTANSLHRMLLTFSEQTQGQKFPEHASDQQMLEIVMARYEKELMHPIQNLLKGELAHALLIQIQKLKLDIETAMLELNQILRANEINFAILAALPAFFVSLLLIMLVRAWVKQDTRAEGRGRVARIQRRLLVVEVEKWIMQYQTCMNQGKEKDAQCMFGMVLYSLDRLYRAVERHAKATGEWLCLRQDIVELAKPGLDTASKLILTARMERVYDCLLP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1177		87		12	0.992554
1335	80			20	0.995493
1470	25		75		1.0
1476		66	33		1.0
1984	85	14			0.993533
2000			33	66	1.0
2002			77	11	0.968132
2014			75	25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain