SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1354

Length: 1852 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1354

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HPP integral membrane domain-containing protein [Arabidopsis thaliana] dbj\|BAC41883.1\| unknown protein [Arabidopsis thaliana] gb\|ABN04790.1\| At5g62720 [Arabidopsis thaliana] gb\|AED97647.1\| HPP integral membrane domain-containing protein [Arabidopsis thali	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	57%
Blast2go	hpp integral membrane domain-containing protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	72%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	HPP	IPR007065	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SIG7

Fln msg: your sequence is longer than subject: 262 - 225

Fln protein: MAIEAPGASYRIPYLIPSRANATENNRIPNVFSVICKVGLHNSQFCFQNGKSIGISDSKLFRSLLHAYPKRKRRPRRDSVIVAESVANVSRGTSGSEWWDNLRGAASPRSSDIVWPAAGAFVAMAIMELIDIMIATKGLKLTIAPFGAVCAVLFTAPTSPAAQKYNMFVAHISCAALGVIALAVFGPGWVARSVALAASVAFMIYSGSFHPPAAGLPILFIDGSNFQHLQWWYSIFPGAAGCILLCLMQELVTFLKKNYKF*

Protein Length: 263

Fln nts: CGTCGTGACCTTGGCTGTCACTAATACCATGAGGTCTCCTGTAAGTCATTAAAACCCATCTATCCATCCAATCCTCATACTTTCTTTAAATAGCTCTCCAAATGATAAGGGCACTTCATGGCTAAACATAACAGCAGAGAATCTTTCTCATGGCTCAGAGAATGGGTCCATCCTAAGTATCTCCCACTCAGTAATGTTTGCTTCAGTAAATATTGTTACATGAGAAATTCATATAGAAAAGGGGGTATTCTGCAATATTATTACAATTGCGGGCTGAATTCAAAGTTATTCTTCAAAGGAACAACAGGAATAGCCGTTGGGAGGCGTTGAAGGCCAAATATAGAGAGACAAGTGGCTGAAAGAGCTTTCCAGGGGCCAAAAGGTCATGATCCTAGCTTGTCAGACTCGAGAGAAAATGAATTCCGCCGTATACACGAATTCGGATGGGGTCAGATAATGCACATTTATATGCATAATTTCGTCCCCAAATCAATCGGGTAGTAATCAATCAGACGTGTTCCGCGTAGACTAATTTTACAGCCTA_-_ATGGCAATCGAGGCACCAGGGGCCAGTTACAGGATACCCTACCTCATCCCGTCCAGAGCCAACGCAACAGAGAACAACAGGATTCCCAATGTGTTTTCTGTAATTTGCAAGGTGGGTCTTCATAATTCCCAATTCTGTTTCCAAAATGGTAAGAGCATCGGCATCTCCGATTCCAAGCTTTTCAGATCTCTTCTGCATGCATATCCCAAGAGGAAGAGGAGGCCCAGGAGAGACAGTGTGATAGTAGCAGAATCGGTGGCCAATGTGAGCAGGGGTACTTCAGGCTCAGAGTGGTGGGACAATCTTAGAGGAGCGGCAAGTCCTCGTTCTAGCGATATCGTTTGGCCAGCAGCAGGGGCATTTGTAGCAATGGCAATCATGGAACTCATAGATATTATGATTGCAACCAAAGGTCTGAAATTGACAATTGCTCCCTTTGGTGCTGTTTGTGCTGTGTTGTTTACTGCTCCAACCTCACCAGCAGCACAGAAATACAATATGTTCGTTGCCCATATCAGCTGTGCAGCACTTGGAGTGATTGCATTAGCTGTTTTTGGCCCAGGTTGGGTTGCCCGCAGTGTTGCCCTAGCTGCATCTGTGGCATTCATGATATATTCGGGTTCTTTCCATCCTCCTGCTGCTGGGTTGCCTATACTTTTCATTGATGGATCAAACTTTCAACACCTGCAATGGTGGTACTCCATATTTCCTGGAGCAGCAGGCTGCATTCTATTATGTTTGATGCAAGAGCTGGTGACATTTTTGAAAAAGAATTACAAGTTTTGA___AGAGTTGATGTAATTCGAAAGTTGATATCTCTCTCTTCCGGAGAAAGGTTTATTGCCCACAAAAAGTTCCAAAGTTTCACCTGTAAATGAATAGTTCTTTGGAAAAAATAAGAAAAAATGGCAAATGGACCATAACTATGTTTATGAAATGCTTTCTGAACTCTATTGCAGCAAGATAAAGCAACTCTCGTGCTCTTCTCATTAAATCTGTAGCAGAAGGTGACTTCCTGTTTGAACTTGCCTGTTGCAATTTCAATGCAAGCAATTGTTACATGCACGTTGTCATTTGTTTGGAAATCCTTAGAATTGGCTGTTAAGAGTGAAACTGGCCTTAGGAGGTTGTTCTAGGAACCAACGTATATGTGCCTGCAAGAGAAAACCTGGAACTAAAGTTGTAAAATAAGTACTTGCACAGTTGCCGGGTTCAAATTGTTCAAATATTGTCCTTGAAGACGCTGGTAAGTATAAATCCTGGTTTGTACTTCTTTGTCTCTCCTTGAAGTTAATGGCTAAATGTTCACA

Fln Alignment:

Contig1354___LHAYPKRKRRPRRDSVIVAESVANVSRGTSGSEWWDNLR---GAASPRSSDIVWPAAGAFVAMAIMELIDIMIATKGLKLTIAPFGAVCAVLFTAPTSPAAQKYNMFVAHISCAALGVIALAVFGPGWXXXXXXXXXXXXFMIYSGSFHPPAAGLPILFIDGSNFQHLQWWYSIFPGAAGCILLCLMQELVTFLKKNYKF
D7SIG7______________LHFTSRKIDRRRRDFGIVASS--NVA-----APFWDGWKPEKSSAAPSLSDILWPSAGAFAAMAILGKMDQTLASKGISMTIAPLGAVCAVLFATPSSPAARKYNMFMAQIGCAAIGVLAFSLLGPGWLARSTALGASIAFMIYTRSTHPPAASLPLLFIDGAKFHHLNFWYALFPGATACILLCLIQEMVCYLKQNFKF

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1296			90	10	0.90298
1297	90			10	0.90298
1362	87		12		0.992554
1367	11			88	0.923564
1368	11	88			0.923564
1369		11		88	0.923564
1374		88		11	0.923564
1376		11	88		0.923564
1378		11	88		0.923564
1379	87			12	0.992554
1380	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain