SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1343

Length: 1700 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1343 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/LRR-repeat protein 15 [Arabidopsis thaliana] sp\|Q9SMY8.2\|FBL15_ARATH RecName: Full=F-box/LRR-repeat protein 15 gb\|AEE86191.1\| F-box/LRR-repeat protein 15 [Arabidopsis thaliana]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	22%
Blast2go	protein	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	organ formation	GO:0048645	Biological Process	70%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	70%
Blast2go	auxin homeostasis	GO:0010252	Biological Process	70%
Blast2go	protein binding	GO:0005515	Molecular Function	70%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Mob1/phocein	IPR005301	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A998

Fln msg: STOP codon was not found. Distance to subject end: 55 aas, your sequence is longer than subject: 502 - 335

Fln protein: MALDGSLEEQEQRQEAHPDEALLPSSPSHAISGTENAADEVPLKRPKLFVPSLEMNCMTSGSSTAMEQYSSTNLEYESSRNLEHGLSQNLPPRVLQPSESTESLNTGDDNEGDHSGRDNINHHEVKLDLTDDLIHMVFSFLDHKTLCTTGLVCRQWHAASVHEDFWRCLNFENCQITAEQVAKLCRRYTRAVELHLPGSLLDISVREALRSLRSLEVLTIDRGTLSDAFFGLLADFPVLNRLIITEAALERGGTQEIHIHHESLRYLEVMRCRALRISVSCSLLETLSLKRSSISSAILSCPLLRELDVSSCHKLSDPGVRGAAISCPLLQSLDISNCSYVSDDTLREIAAACTDIRFLDASHCPNISLEAVRMPRLVDLRIHNCEGINATSMAALSQCFFLEALQLDFCWLLTSVTLDLPRLRHISLVNCRKIVELNLSSPALVSINVTSCPILNRVDITSTALEKLVLQKQQSLTTITLQCLHLSEVDLTECDSLTNSIC

Protein Length: 503

Fln nts: ATGGGGGTCCCATTCCTGGTTTGTTCTTCTCTCCCACACAGACATTACCATTGACTCGCAGATCTTTTATATGCGGGTCCTTGTGTAGACACTATTTATCTTTGTTTTTATATGTGTAGACCAACGGCGCTTTGGTGGTGTTAGGGGTCGAATCCCGTGGGTGTTTTACCTTTTAGGACTAGTCCATGCTCG_-_ATGGCATTAGATGGCTCATTGGAGGAGCAGGAACAACGACAAGAAGCTCACCCTGACGAAGCACTGCTACCATCATCACCATCACATGCAATTTCTGGTACTGAGAACGCGGCCGATGAAGTCCCACTCAAGCGACCCAAGCTCTTCGTCCCATCCCTGGAAATGAACTGCATGACTTCGGGCTCTTCAACTGCCATGGAACAGTACTCATCTACGAATTTGGAATACGAATCATCTCGAAACTTGGAACATGGCTTATCTCAAAACCTGCCACCTAGGGTACTTCAGCCCTCAGAATCTACGGAGTCACTGAATACAGGAGATGACAATGAAGGAGATCACAGTGGCCGTGATAATATTAATCATCATGAAGTAAAATTGGACCTTACTGATGATTTAATTCACATGGTCTTCTCTTTTCTAGACCATAAAACGCTGTGTACAACTGGTCTAGTATGCAGGCAGTGGCATGCTGCCAGTGTTCATGAAGACTTCTGGAGATGTTTGAATTTTGAGAATTGTCAAATTACTGCAGAGCAAGTTGCTAAATTGTGTCGTAGGTATACAAGGGCTGTAGAACTGCATCTTCCAGGTTCTCTTTTGGATATTTCTGTCCGTGAAGCATTGCGTTCTCTTAGGAGTCTTGAGGTATTAACCATAGACCGTGGAACTTTAAGTGACGCATTTTTCGGCTTATTGGCCGATTTTCCTGTGTTGAACCGTTTGATAATCACTGAAGCTGCTTTGGAGAGAGGCGGTACTCAAGAGATACACATTCATCATGAGTCTTTGCGTTATCTTGAGGTTATGCGATGTCGAGCACTTCGAATCTCTGTCAGTTGTTCTCTGCTGGAAACCTTGTCGCTTAAGCGCTCAAGCATTTCATCTGCCATATTGTCATGCCCTCTTCTTCGAGAGCTTGATGTATCTTCATGCCATAAGCTTTCAGATCCAGGAGTTCGTGGTGCAGCTATATCATGTCCATTATTACAGTCCTTGGATATTTCCAATTGCTCTTATGTTAGTGATGATACACTCAGAGAAATTGCAGCTGCTTGTACAGATATCCGTTTTCTTGATGCGTCCCACTGTCCAAATATTTCACTAGAGGCTGTGAGAATGCCAAGGCTTGTTGATCTGAGGATTCATAATTGTGAAGGAATCAATGCTACGTCCATGGCTGCTTTATCCCAGTGTTTTTTTCTTGAGGCACTTCAACTTGATTTCTGCTGGTTGTTAACTTCTGTCACACTGGATCTTCCAAGGCTTCGACACATAAGTCTAGTAAATTGCCGCAAGATTGTTGAATTAAACTTGTCTAGTCCAGCTTTGGTATCTATAAATGTCACAAGTTGTCCAATTCTCAATCGAGTTGACATTACCTCAACTGCACTTGAGAAATTGGTCCTCCAGAAGCAGCAGAGTTTGACAACTATAACTTTACAATGCCTTCATTTGTCTGAAGTTGATTTGACAGAGTGTGACTCATTGACTAACTCAATTTGTGA

Fln Alignment:

Contig1343___RCLNFENCQITAEQVAKLCRRYTRAVELHLPGSLLDISVREALRSLRSLEVLTIDR-GTLSDAFFGLLAD-FPVLNRLIITEAALERGGTQEIHIHHESLRY-----LEVMRCRALRISVSCSLLETLSLKRS------SISSAILSCPLLRELDVSSCHKLSD--------------------PGVRGAAIS-----CPLLQSLDISNCSYVSDDTLREIAAACTDIRFLDASHCP--NISLEAV-RMPRLVDLRIHNCEGINATSMA-ALSQCFFLEALQLDFCWLLTSVTLDLPRLRHISLVNC
D5A998______________KCIGVTDDGISA--IAACCTELNK-LDLTCCRDLTDIAIKAVATSCRYLSSFMMESCGLVTERSLTMLGEGCPFLQELDLTDCRINNTGLKSISRCSELITLNLGFCLNISAEGIYHIGACCSNLQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKSISRLQKLHNLEIRGCPGISSAGLSAIALGCKRIVALDVKGCYNIDDAGILAIADSCQNLRQINVSYCPISDVGLSTLARLSCLQNMKLVHLKNVTVNGFASALLDCESLKKLK-----LFEGLKFILPR----SLIEC

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1234			16	83	0.994512
1235	83	16			0.994512
1237	16		83		0.994512
1238	16			83	0.994512
1247	33			66	1.0
1361	41		58		1.0
1580			10	90	0.90298
1581	10		90		0.90298
1585			10	90	0.90298
1589		90	10		0.90298
1590	90	10			0.90298
1591		10		90	0.90298
1593	10			90	0.90298
1594	90		10		0.90298
1595	90		10		0.90298
1596	90			10	0.90298
1597	90	10			0.90298
1600	90		10		0.90298
1602	90	10			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain