SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1123

Length: 1957 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene1123
CGTCGTGACCTTGGCTGTCACTCAATTTTGGCCCCGTTCACCGACTGGCTCTGGATTTCTGTACGTGTCCAGGAGTTCCCTGCAACTTCCAAAGCAAAGCACAGCAGAGCAGGACCCACGAGCGCCCAATTCATCACTGATTCAAATAAAAGAGAGCAAACGATAATTGAAACAAGGATTCAAATGGATAAAGGCTAACAACTGCCTCATTAGGCCGACGCCCTGTACTATCCAATAATACCCAAGTTTTCTGCATTAAGAATGGCTGCTTCAGAGATTATCAGAACAATGGGGGCTCTGCTTGTAGTAATATTAGCAGGATCACAGATTATGGGCGCGGGAGCCGTAATGGCAGGAGGCTGCAGGACGTTCTGTGGGAACATAACGGTGGATTACCCATTTGGAATCGAGCAAGGCTGCGGGCACCCCAAGTACCGGGATCTGGTCTACTGCATCAACAATGTAATGATGTTTCATGTCATTTCTGGAAGCTACGAGGTCGTTAACATTGACTATGGCTTCAAGCTGCTCGACATTTTCGACCCCAAGATGTCGACCTGCGCTTCAATGCACAAGAGCGACGGCTTTTTCCTCGAAGAAGACCACGCTCGCTACCTGCAGCCCACGCCCGACAATGCCTTCATGCTGCTGGGTTGCTCCAAGGCCTCCCCGCTCTTCGAGGGCTTCCCCGACAAGCACCTCCCCTGTCGCAACGTTACAGGGATGGGCTGCGACGCCTTCTACGACTGCCCTTCTTGGGTTGGGTTTGGCAAGAAGAGCAGAGCCACCAGCCCCCCGCCTTGCTGCGGAATCCCTTATTCCTCCATTGGCTCCCTCAATCTCTCGCGCCTCCAGTGCTACTCTTACGCAACTGTTTACGATTCGGCCCCCATCAAGATCGCTAACCCTAGGGAATGGTCATATGGGATTCAGCTCAGCTTTTCTCTGCCAGAGGATTCGGACTTCTGCAGATCCTGTAAAGCCTCCAAGGGCGTCTGCGGTTACGATGTTGTGAAGGAGAATAATCTTTGCCTGTGCGATGGCTGGAATTCAACAACTTCGTGCGACCCAGGAAACCCTTCTGCAGGTGCAACTTACAATTACAGACCAGAGCTGCTTTCTTTACTGTTTGCAGCAATGCTGCTTATCACAGCAATTTAAAGCCCAATACAATGGATGATTTCAAGTCTAAACGCTTTTTGGCAATGGAGATTTTGGGTCTGGAAGTGAATTCTCAGAGATCAAATCTGCGATTCAGAAGCGTGGAGAGGCTGGTTATTTGCCCTTCAAAATCATTTCATTCCATTGGAACAGAAATTCTCACAAAATGTAGAGAGATCTGAGTACAAAGGAATTTTCTATCACTCCAAGATTTTGTAGTCTGCAGAATGATGTGTGATTCTGGTTACATATACGGCTTGAATTCAGGTCCTTGAGTTTTAGAACTTAGAAGTAGTAAGGTCACAATTGGAAGAGACTGTGATACCCGTTGGCTGCAAAATCTAGTACATATATTTTATTGGCAAGTTATTCATTTGTATTCTTTTGCATTCTCTTGACGGGTGATCCAAATACAATTAATATTGCAGACATGGTCATGGTTCTGTTATTCATAGTGGGGAGCTTTATCAAGTTCCAGTTTACCTCCCAGATCAAGAGATTTTAATGATGTTAAAAGAATATACATGAGAACAACGCAAATGTTTTATATTTGTTGTTATAAAAAATGGAGATTAGCCTCTATTGCTCTTCATAGTGGACCTGGCCAGAATTCATGAATTGGCAAGTTGGATATTGTTACTGAAACTTGAAGATTAACTTCTATTCCTTTGCATAGTGGAAGTGCCAGAATCATGAATGGGCAGATTGGACCTTTATGAAGTGTGCAATTTGTGTTTATTGATCAATTACACAGTTTCTTCAGATAATGGGCAATGAATTATACAGTTTGTTTAAG

Ace file of the UniGene sp_v2.0_unigene1123

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Herpes_BLLF1 domain containing protein	-	-	9.0e-05	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	uncharacterized protein	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9S9

Fln msg: your sequence is longer than subject: 300 - 145

Fln protein: MAASEIIRTMGALLVVILAGSQIMGAGAVMAGGCRTFCGNITVDYPFGIEQGCGHPKYRDLVYCINNVMMFHVISGSYEVVNIDYGFKLLDIFDPKMSTCASMHKSDGFFLEEDHARYLQPTPDNAFMLLGCSKASPLFEGFPDKHLPCRNVTGMGCDAFYDCPSWVGFGKKSRATSPPPCCGIPYSSIGSLNLSRLQCYSYATVYDSAPIKIANPREWSYGIQLSFSLPEDSDFCRSCKASKGVCGYDVVKENNLCLCDGWNSTTSCDPGNPSAGATYNYRPELLSLLFAAMLLITAI*

Protein Length: 301

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGGCCCCGTTCACCGACTGGCTCTGGATTTCTGTACGTGTCCAGGAGTTCCCTGCAACTTCCAAAGCAAAGCACAGCAGAGCAGGACCCACGAGCGCCCAATTCATCACTGATTCAAATAAAAGAGAGCAAACGATAATTGAAACAAGGATTCAAATGGATAAAGGCTAACAACTGCCTCATTAGGCCGACGCCCTGTACTATCCAATAATACCCAAGTTTTCTGCATTAAGA_-_ATGGCTGCTTCAGAGATTATCAGAACAATGGGGGCTCTGCTTGTAGTAATATTAGCAGGATCACAGATTATGGGCGCGGGAGCCGTAATGGCAGGAGGCTGCAGGACGTTCTGTGGGAACATAACGGTGGATTACCCATTTGGAATCGAGCAAGGCTGCGGGCACCCCAAGTACCGGGATCTGGTCTACTGCATCAACAATGTAATGATGTTTCATGTCATTTCTGGAAGCTACGAGGTCGTTAACATTGACTATGGCTTCAAGCTGCTCGACATTTTCGACCCCAAGATGTCGACCTGCGCTTCAATGCACAAGAGCGACGGCTTTTTCCTCGAAGAAGACCACGCTCGCTACCTGCAGCCCACGCCCGACAATGCCTTCATGCTGCTGGGTTGCTCCAAGGCCTCCCCGCTCTTCGAGGGCTTCCCCGACAAGCACCTCCCCTGTCGCAACGTTACAGGGATGGGCTGCGACGCCTTCTACGACTGCCCTTCTTGGGTTGGGTTTGGCAAGAAGAGCAGAGCCACCAGCCCCCCGCCTTGCTGCGGAATCCCTTATTCCTCCATTGGCTCCCTCAATCTCTCGCGCCTCCAGTGCTACTCTTACGCAACTGTTTACGATTCGGCCCCCATCAAGATCGCTAACCCTAGGGAATGGTCATATGGGATTCAGCTCAGCTTTTCTCTGCCAGAGGATTCGGACTTCTGCAGATCCTGTAAAGCCTCCAAGGGCGTCTGCGGTTACGATGTTGTGAAGGAGAATAATCTTTGCCTGTGCGATGGCTGGAATTCAACAACTTCGTGCGACCCAGGAAACCCTTCTGCAGGTGCAACTTACAATTACAGACCAGAGCTGCTTTCTTTACTGTTTGCAGCAATGCTGCTTATCACAGCAATTTAA___AGCCCAATACAATGGATGATTTCAAGTCTAAACGCTTTTTGGCAATGGAGATTTTGGGTCTGGAAGTGAATTCTCAGAGATCAAATCTGCGATTCAGAAGCGTGGAGAGGCTGGTTATTTGCCCTTCAAAATCATTTCATTCCATTGGAACAGAAATTCTCACAAAATGTAGAGAGATCTGAGTACAAAGGAATTTTCTATCACTCCAAGATTTTGTAGTCTGCAGAATGATGTGTGATTCTGGTTACATATACGGCTTGAATTCAGGTCCTTGAGTTTTAGAACTTAGAAGTAGTAAGGTCACAATTGGAAGAGACTGTGATACCCGTTGGCTGCAAAATCTAGTACATATATTTTATTGGCAAGTTATTCATTTGTATTCTTTTGCATTCTCTTGACGGGTGATCCAAATACAATTAATATTGCAGACATGGTCATGGTTCTGTTATTCATAGTGGGGAGCTTTATCAAGTTCCAGTTTACCTCCCAGATCAAGAGATTTTAATGATGTTAAAAGAATATACATGAGAACAACGCAAATGTTTTATATTTGTTGTTATAAAAAATGGAGATTAGCCTCTATTGCTCTTCATAGTGGACCTGGCCAGAATTCATGAATTGGCAAGTTGGATATTGTTACTGAAACTTGAAGATTAACTTCTATTCCTTTGCATAGTGGAAGTGCCAGAATCATGAATGGGCAGATTGGACCTTTATGAAGTGTGCAATTTGTGTTTATTGATCAATTACACAGTTTCTTCAGATAATGGGCAATGAATTATACAGTTTGTTTAAG

Fln Alignment:

Contig1123___MGCDAFYDCPSWVGFGKKSRATSPPPCCGIPYSSIGSLNLSRLQCYSYATVYDSAPIKIANPREWSYGIQLSFSLPEDSDFCRSCKASKGVCGYDVVKENNLCLCDGWNSTTSCDPGNPSAGATYNYRPEXXXXXXXXXXXITAI
D5A9S9______________MGCDAFYDCPSWVGFGKKSKATRPPPCCGIPYSSIGSLNLSRLQCYSYATAYNSAPIKVANPREWSYGIQLSFSLPEDSDFCKSCKASKGVCGYDVVKENNLCLCDGWNSTTSCDTGNPSAGATYNYRPELFYLLFAGMLLITAI

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
605	42		57		1.0
791	12		87		0.992554
980	83		16		0.994512
1026		25		75	0.996473
1062	66		33		0.997452
1069		75	25		0.996473
1089		66		33	0.997452
1130		66		33	0.997452
1171	66	33			0.997452
1191	33		66		0.997452
1369	33		66		0.997452
1482			87	12	0.992554
1489	14		85		0.993533
1490	14			85	0.993533
1493			85	14	0.993533
1658	85		14		0.993533
1668	14		85		0.993533
1669	85	14			0.993533
1684	40		60		1.0
1690			60	40	1.0
1742		40		60	1.0
1934	75			25	0.996473
1935	75			25	0.996473
1936		25		75	0.996473
1938	75	25			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain