SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1061

Length: 1769 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1061

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	f-box protein	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD53

Fln msg: your sequence is longer than subject: 351 - 104

Fln protein: MQRGKSKCSSSKSPDRNQAMPSVSSCSLFRPSPNAQSGEVGRSNPSAFRSLNGLLVAENRKPKKGFYSSCSKRREGSRTPNKNSNRYLKPGALAQLRDARINTRASSSCTAIGRKRVLVMDYGDKGNPGGGADGAAAGPLLALSKDSKNHDLSPQKKILLTPKTPSTPVTPKTTSAPPLFEEGVQDPEVESRLESLPFDLLIRILCLLHHDQLKTVFHVSQRLRKVAVVARQCYFNYTTPDRSRQEMLKMMTPRPDEHWPFVEGELSSGPLMRCPVTPKAPRHDQHRPPARLSVAEMKQISASLFQGPPSRCYRNRPPGLPRPGSRSLPSHRVLFYEDELCQAVAQNTLR*

Protein Length: 352

Fln nts: ATGGGGGCAAAAATGGCGCCCATTTTGTGGTAGGCACCATTATAATACGTCGGTGACCTTGCGCTGTCGACTCAGCATTTTGTGCTTCAAATTCTGCGTCGAC_-_ATGCAGCGAGGGAAGAGCAAATGCAGCAGCAGCAAATCCCCGGATCGAAACCAAGCAATGCCATCGGTTTCATCTTGTTCTTTATTCAGGCCGTCGCCCAATGCTCAGAGCGGCGAGGTTGGGAGGTCGAATCCGTCTGCCTTCAGGAGCTTGAATGGTCTGCTGGTGGCCGAAAACAGAAAGCCCAAGAAGGGCTTTTATTCTTCGTGTTCCAAGAGAAGGGAAGGCTCCAGGACGCCTAATAAAAATAGCAACAGGTATCTGAAGCCCGGGGCCCTGGCGCAGCTTCGAGATGCCCGGATTAATACAAGGGCCTCTTCTTCTTGTACTGCTATAGGGCGAAAGAGGGTTCTGGTCATGGATTATGGTGATAAGGGCAACCCAGGGGGAGGAGCAGATGGGGCAGCAGCGGGGCCGCTTCTCGCTCTGTCAAAGGACTCTAAGAACCACGACTTGTCCCCTCAAAAGAAAATTCTTCTAACGCCCAAAACTCCTTCTACTCCTGTAACCCCCAAGACCACCTCCGCACCTCCTTTGTTCGAAGAAGGAGTTCAAGACCCTGAGGTCGAATCTCGTCTCGAATCATTGCCTTTTGACCTCCTGATTAGAATTCTTTGCCTTCTTCACCATGATCAACTTAAGACCGTTTTCCATGTCTCACAGCGTTTAAGGAAAGTGGCCGTTGTAGCGAGGCAGTGTTATTTCAATTACACAACTCCAGATAGATCTCGGCAAGAAATGCTGAAGATGATGACGCCCCGACCTGACGAGCATTGGCCCTTTGTGGAGGGAGAGCTTAGCAGTGGTCCTTTAATGCGATGTCCAGTGACCCCAAAGGCTCCTAGACATGATCAGCATCGGCCTCCGGCTAGGCTTTCAGTTGCAGAAATGAAACAAATTTCAGCCTCGCTCTTCCAGGGCCCGCCTTCTCGATGTTACCGCAATAGGCCACCCGGCTTGCCACGCCCAGGATCAAGGTCTCTGCCCTCTCACAGAGTCTTGTTTTATGAGGATGAATTGTGCCAAGCCGTAGCTCAAAATACACTCCGCTGA___ATAGAAACGTCTTTTGTTTCAAGGGCCTTAGTGCTTCTCACTCCTTGTGAGAGTTTCTTTTGTATATTTACTAGCATAGACAACAAATTCTCTTTGTTAGCATTTTCATACATAGATTGTATTCTACGGTGAGCGGAGATTTTGCTATACTACAGTTTTTTGGCTGCTAAAGTAATAAGACTACTCTCTCTATTATCTGTACATGTATCTGCAGAGCATGTGAGATGGATGGCTAAAGTGCTTATGTAAATAAAGTTTTCACGGACAATAACACTTATGATACATCCCAGTTTTGCCTTATCAGTTGAGTATTCCTCAAATGACCTGGAATGCTAGATAGGTTCTGCGTTCTGCCAAATGTGATGAATTTGCAAGTTAGTTTTACAGAAGTCCTGTCTGATTGTAAGGTGGAGGCTATATCTGAGTAATTTCTTCAAATTTCATCTCTGAATTCTTGGAAACGCTTGCCACTTCATTATCTTTGTCATTCTATGCGTGCTACAATGTAATATATGCATTCCTCGGGAGGCTAATCCCATGGTTGATGTTCTCTGTATTGTTTTTGTAAGGTTCATGGAGGATGACTTCTGCAATTTATTTCACAGCCGTTCGC

Fln Alignment:

Contig1061___MLKMMTPRPDEHWPFVEGELSSGPLMRCPVTPKAPRHDQHRPPARLSVAEMKQISASLFQGPPSRCYRNXXXXXXXXXXXXXXXHRVLFYEDELCQAVAQNTLR
D5AD53______________MLKMITPRPDEHWPFVEGEFGSGSLMRCPVTPRAPRHDQQRPPARLSLAEMKQISASLFQGPPSRLYRNRPPGLPRPGSRSLPSHRVLFYEDELCQAVAQNTLR

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
864			66	33	0.997452
865	75			25	0.996473
1006	50	50			1.0
1008		50		50	1.0
1010			50	50	1.0
1011		50		50	1.0
1013	50	50			1.0
1014		50		50	1.0
1018		50	50		1.0
1019		50	50		1.0
1020	50	50			1.0
1021			50	50	1.0
1023			50	50	1.0
1025	50	50			1.0
1027			50	50	1.0
1029	37	62			1.0
1263		90	10		0.90298
1287		10	90		0.90298
1289			90	10	0.90298
1290		90		10	0.90298
1309		88		11	0.923564
1539	33		66		0.997452
1540	33			66	0.997452
1542			33	66	0.997452
1574	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
126	137	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain