SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene977

Length: 1041 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene977

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	fibrillin [Cyanothece sp. CCY0110] gb\|EAZ92714.1\| fibrillin [Cyanothece sp. CCY0110]	-	-	3.0e-06	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	pap fibrillin family protein	-	-	0.0	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	structural molecule activity	GO:0005198	Molecular Function	0.0	57%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NM56

Fln msg:

Fln protein: MLITNFYFPSLTNGHQTAHPTLAWKASNLVKITQTASATPISRTQLGKRYGILVARCCSSAPSKLKEQLLSTIADSNGTLREDSIALISSLEKFNPNPDLRLASHLYNGCFESISGSFKGTGKPGEAQKIIEKTVTLGRATFNAFKPTGIEIQLKRTYNHVGIEAEDAYNLLIQFSVSSDGMPPMEGMFINRAVFSVSGSARMDIKFESSAMVPLNPQRDLESWLKLFKDANPTMDEEGSATVTLPPAKGSLDYIYLDDDMRITRGNRGAIVVVKRLQSKVIHL*

Protein Length: 286

Fln nts: ATGGGGGTAGCCACGATGCACAATCTCCGCCAGCCATAGGTAAACAACCCGACTGTCACCTGCATTCGTCGGCTATTGGCCATTTTCATCTTCAGAC_-_ATGTTGATCACAAATTTTTACTTCCCTTCACTTACCAATGGACATCAAACTGCTCATCCTACTCTGGCATGGAAAGCCTCTAATCTCGTTAAAATAACTCAAACAGCCTCAGCAACGCCCATTTCAAGGACCCAGTTAGGGAAACGATATGGAATTCTTGTTGCAAGATGTTGTTCCTCTGCGCCTTCTAAGCTGAAGGAGCAACTTTTATCTACAATTGCAGACTCTAATGGCACCCTAAGAGAGGACTCCATAGCTCTCATATCGTCTCTAGAGAAGTTCAACCCCAACCCAGATCTCAGACTCGCTTCTCATCTCTACAATGGCTGCTTCGAATCAATCAGTGGGTCCTTCAAAGGCACTGGCAAACCTGGAGAAGCTCAGAAAATAATAGAGAAAACAGTTACCCTGGGCAGGGCTACTTTCAACGCCTTCAAGCCAACTGGCATTGAGATTCAGCTGAAACGAACTTATAATCATGTGGGTATAGAGGCCGAAGATGCTTACAATCTGCTAATCCAATTCTCAGTTAGTTCAGATGGTATGCCCCCCATGGAAGGCATGTTCATAAACAGGGCTGTGTTTAGCGTCTCTGGTTCAGCCAGGATGGACATCAAATTTGAGTCTTCTGCTATGGTTCCTCTTAATCCTCAGAGGGATTTGGAATCGTGGCTTAAGCTCTTCAAGGATGCCAATCCCACTATGGATGAGGAAGGATCTGCAACGGTGACTCTGCCCCCTGCCAAAGGCTCTCTTGATTATATTTATCTTGATGATGATATGAGAATTACGAGGGGAAATAGAGGAGCAATTGTTGTTGTTAAGAGGCTACAGAGCAAAGTCATCCATCTTTGA___GATGTGATTCCAATTCTGTAAGTATTGATGATTTCAGAAGTGCTTATGTAATAAGTTATTTACTGGCAGTAATCACTAGATATAGCTGT

Fln Alignment:

Contig977___MLITNFYFPSLTNGHQTAHPTLAWKASNLVKITQTASATPISRTQLGKRYGILVARCCSSAPSKLKEQLLSTIADSNGTLREDSIALISSLEKFNPNPDLRLASHLYNGCFESISGSFKGTGKPGEAQKIIEKTVTLGRATFNAFKPTGIEIQLKRTYNHVGIEAEDAYNLLIQFSVSSDGMPPMEGMFINRAVFSVSGSARMDIKFESSAMVPLNPQRDLESWLKLFKDANPTMDEEGSATVTLPPAKGSLDYIYLDDDMRITRGNRGAIVVVKRLQSKVIHL
A9NM56_____________MLITNFYSPSLTHGHQTAHSTLAWKASNLIKITQTTSATPISRTQSRKPNGILVARCCSSALPKLKDQLLSTIAASNGTISEDSMALISSLEKLNPNPDLRLASHLYNGCFQSISGSFKGTGKPGEAQKIVEKTVTLGRAAFNAFKPTDIEIQLEQTYNHVGIEAEDAYNLLIQFSVSSDGIPPMEGMFINRAVFSVSGAARMEVRFESSAMVPLNPNRDLESWLKLFKDANPTMDEEGSATVALPPAKGSLDYIYLDDDLRITRGNRGAIVVVKRLQSKVIHL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
285		33		66	1.0
335	11	88			0.923564
358		11		88	0.923564
461	10			90	0.90298
569		11		88	0.923564
675	11		88		0.923564
676		88		11	0.923564
688	12			87	0.992554
690	12			87	0.992554
691		87		12	0.992554
816		16		83	0.994512
878		20		80	0.995493
881			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain