SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene815

Length: 1420 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene815 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mTERF domain containing protein	-	-	5.0e-29	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	mitochondrial transcription termination factor	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNP9

Fln msg: your sequence is longer than subject: 366 - 334

Fln protein: MGVECNIFKKVNVEDPPILHLEWRGISKPSMQHCLCPCSLAATPKLNLKLGVTFSCSSIWRPTLPQPKKKRNVSATVSASVPLLRGRPKQIQENQDEGREEHSVTDEVREKLAYLESIEVDTYSVITKNPSISSTSLNSIQSVVKFLQAMGILDTDLGRLFNICPEALTASVPRQLRPVFTFLLREVHIPATRLRRVIYRRPRLLACSVKEQLRPTLYFLQRLGFTDVGKYSFLLPCSVEGKLMPRLQYFQNLGLSYKDAVSMFLKFPPLFNYSVDGNFRPKLDYLVNDMGGNVDDLKAFPQYFAFSLERRIKPRHRFLVENDIDLPLCVMLRTKDEEFYHRLKDLCDGYLRVNQSTMKENHCLY*

Protein Length: 367

Fln nts: CGTCGTGACCTTGGCTGTCACACATTTTATAGTTTCGGCCTCACGAAAGCGCAGAGGATGTTGGAAGCAAAGCAGACATGACCATTCGGTAGAAAAAAACGGGAGAATGAAGCGGATGTCCGTGTGCATAAATATGAAGGAACTCCTGCC_-_ATGGGAGTGGAATGCAACATTTTCAAGAAAGTGAATGTGGAAGACCCCCCGATTCTCCATTTGGAGTGGAGGGGAATTAGCAAACCCTCCATGCAGCACTGCCTCTGCCCCTGTTCTCTTGCTGCAACGCCCAAACTGAACTTGAAGTTGGGCGTCACTTTTTCTTGTTCTTCTATTTGGCGTCCGACACTTCCCCAACCCAAGAAGAAGAGGAATGTCTCTGCCACAGTCTCTGCCTCCGTTCCTCTTCTTCGTGGGCGGCCAAAACAGATTCAAGAAAATCAGGATGAAGGAAGGGAAGAGCACTCCGTGACAGATGAAGTGAGAGAAAAACTGGCGTACCTGGAAAGCATTGAGGTCGACACATACAGCGTCATAACAAAGAACCCTTCAATCTCAAGCACCAGTCTAAACTCAATCCAATCCGTTGTTAAGTTTCTACAAGCCATGGGTATTCTCGACACAGATCTAGGAAGGCTCTTCAACATCTGTCCAGAGGCATTAACTGCTAGCGTACCCCGCCAGTTAAGGCCCGTTTTCACCTTTCTCCTGCGGGAGGTCCACATCCCTGCAACCCGCTTGCGCAGGGTTATTTACCGGCGCCCCCGGTTACTGGCCTGCAGCGTGAAGGAGCAGCTCCGGCCAACTCTGTATTTTCTACAGCGACTCGGATTTACCGACGTGGGTAAATATTCGTTTCTTCTTCCTTGTAGCGTGGAAGGCAAGCTAATGCCGCGGTTGCAGTATTTTCAAAACCTGGGATTATCATATAAAGACGCGGTGAGTATGTTTCTGAAATTTCCTCCACTTTTTAACTATAGTGTTGATGGTAATTTCAGACCCAAATTGGATTATTTAGTCAATGATATGGGTGGGAATGTTGATGATTTGAAGGCCTTCCCTCAGTACTTTGCTTTCAGTTTAGAAAGGAGAATTAAGCCCAGGCACAGGTTTTTGGTTGAAAATGATATTGACCTTCCTTTATGTGTTATGCTGAGAACAAAAGATGAGGAATTTTATCATAGATTGAAAGATTTGTGTGATGGATATTTGCGCGTCAATCAATCCACAATGAAGGAGAACCATTGCTTGTATTGA___ATTTGCTTCCATCGGTCTGAATGGAAGATGCGTGGATTTGATAGATAAACTTTATATTCAAAGTTATATAAACATATTCCATCAACTATCTACGAAATGCACTGTGATTGCCTGTGTCTTAAATACTCGTATTTGGAGGATGCAAGGCCAAGAACTACAGCTGCAATTGTAC

Fln Alignment:

Contig815___MQHCLCPCSLAATPKLNLKLGVTFSCSSIWRPTLPQPKKKRNVSATVSASVPLLRGRPKQIQENQDEGREEHSVTDEVREKLAYLESIEVDTYSVITKNPXXXXXXXXXXXSVVKFLQAMGILDTDLGRLFNICPEALTASVPRQLRPVFTFLLREVHIPATXXXXXXXXXXXXLACSVKEQLRPTLYFLQRLGFTDVGKYSFLLPCSVEGKLMPRLQYFQNLGLSYKDAVSMFLKFPPLFNYSVDGNFRPKLDYLVNDMGGNVDDLKAFPQYFAFSLERRIKPRHRFLVENDIDLPLCVMLRTKDEEFYHRLKDLCDGYLRVNQSTMKENHCLY
B8LNP9_____________MQHCLYPCPLPPTPKLNLKLGVTFPFSS-WRPTLPQPKKKKNVSATVSASIPLLLGRPKQNQENQDEGREEHSVNEEVREKLAYLESIGVDTYSAITENPSISATSLNSIQSVVKFLQTMGMLDTDLGRLFGICPEALTASVSRQLRPIFTFLLREVQIPAIRLRRVIYRRPRLLACSVKEQLRPTLYFLQRLGFTDVGKYSFLLPCSVEGKLMPRLQYFQNLGLSYKDAVSMFLKFPPLFNYSVEGNFRPKLDYLVNDMGGNVDDLKAFPQYFAFSLEKRIKPRHRFVVENDIELPLSVMLRAKDDDFYHRLKDLCDGSLRVNQSIIKENHCLY

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1119		90	10		0.90298
1120			90	10	0.90298
1121		90	10		0.90298
1122	10	90			0.90298
1125	90		10		0.90298
1133			10	90	0.90298
1137		10	90		0.90298
1138			10	90	0.90298
1139	10			90	0.90298
1140		10		90	0.90298
1175		27		72	1.0
1199		90	10		0.90298
1215			88	11	0.923564
1219	88		11		0.923564
1221		11		88	0.923564
1222	12	87			0.992554
1224		12	87		0.992554
1225	12		87		0.992554
1226	12		87		0.992554
1253	50	20		30	1.0
1283		33		66	1.0
1296		11	88		0.923564
1352		20	80		0.995493
1354		20		80	0.995493
1355	20			80	0.995493
1366	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain