SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene686

Length: 1601 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene686

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] gb\|AAK28646.1\|AF360349_1 unknown protein [Arabidopsis thaliana] gb\|AAC17619.1\| Contains similarity to NFATc3 gb\|U28807 from Mus musculus [Arabidopsis thaliana] gb\|AAK93762.1\| unknown protein [Arabidopsis thal	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	uncharacterized protein	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	61%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQW8

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MPSFLACKMEEEYQFVQKRFFHYRFSQTILIFAALSGLLIIKAAAQSSLCRTNCGSLPIQYPFGIDDGCGSFEYRSLLVCTNNTKLELRTPTGRYLVKNISYANSHIIISDPSMWSCSAGDELPHSISFSLDISRKFSISNFNTFLYFNCNASSVLVKPQPSDCEDETSRCESVCDSNNYLCKSLPDCPKALSKVSCCSYYPRTSDSLRLMLQNCESYTSIYWDIINASGNFSYNQIPAYGIRLNYENLSTNHCLSCQYDGYGRGTCGYETEFGNFLCLCTDRNVSTYCSDHGHLHHKTGRVIAGTVVGVAVGGLISAGVILWYFRRIKPNRPVRIGVDNSRNGDM*

Protein Length: 348

Fln nts: ATGGGGATTCACATGGTGCTCCTTTTCCTTTTTCAAACAACTAGAACATGCTTACACAGATGTCCAGCGCTGAGAGGACGTAATAGCAATATTTTCATGTCTAAGCCTCTGTATTCTGAAAATCC_-_ATGCCCTCTTTCTTAGCCTGCAAAATGGAGGAAGAATACCAATTTGTGCAGAAAAGATTTTTCCATTACAGGTTTTCACAAACTATTTTGATATTTGCAGCTCTTTCAGGTTTGTTGATTATTAAAGCTGCTGCTCAATCCAGTCTCTGTAGGACAAACTGTGGTAGCTTACCCATCCAGTATCCTTTTGGCATTGATGATGGGTGTGGGAGTTTTGAATATAGATCATTGCTTGTGTGCACCAATAACACCAAGCTTGAACTAAGGACACCCACAGGGAGATATCTTGTGAAGAACATCAGCTATGCTAATTCACATATAATTATTTCAGATCCTTCTATGTGGAGCTGCAGTGCAGGAGATGAACTTCCCCATAGCATAAGCTTTAGTCTGGACATCAGCAGAAAGTTCTCCATTTCAAATTTCAATACTTTTCTCTACTTCAATTGTAATGCGTCCTCTGTCCTTGTTAAGCCTCAGCCTAGTGATTGTGAGGACGAGACCAGCAGATGTGAGTCTGTCTGTGATAGCAACAATTACCTCTGCAAAAGTTTGCCTGATTGCCCAAAAGCTCTCTCTAAGGTCTCTTGCTGCTCTTACTATCCAAGGACCTCAGATTCCTTGAGACTCATGCTCCAAAACTGTGAATCATACACTAGCATATATTGGGATATTATCAATGCATCTGGAAATTTTTCCTATAACCAAATTCCTGCCTATGGTATTCGCTTGAATTACGAGAATCTAAGCACAAATCACTGCCTGAGCTGCCAGTATGATGGGTATGGAAGAGGGACCTGTGGCTATGAGACAGAATTTGGCAATTTCCTGTGTCTCTGCACGGACAGGAATGTCAGTACTTACTGTTCAGATCATGGCCATCTTCACCACAAAACCGGCCGGGTGATTGCAGGGACCGTGGTCGGGGTTGCTGTTGGTGGATTGATTTCTGCAGGTGTTATACTTTGGTATTTCAGGAGGATCAAACCAAACAGACCTGTGAGAATTGGGGTGGATAACAGTAGAAATGGCGATATGTAGTCAGTTTACCATTCTTAACTGATTTCTTTTTCTGTCTGAGATATGAGGCTTTAGGACTAGGACCTTATCTGATCAGACCTCAGGGCCAACCTTTTAGTCCAGGCCTTAAGGTATTGCCCATTTTTACAAAGAAAAGGCCTTACCTAAGCTCATATACGGTCTTGGTATTTGGTGAGTTAAAAGTGTTGGTCTTTACATCTGAGTAGTAAGGTTTATATGTTGAAAACAAGGCCATGATTCTGCACTGCAGAATTTTACAGCAGTCATCACCATGATCAAGAGTTGTGCAGCCATAGAAAAGATGCTGTTAGCCTTTGTGTGGGGTTTTCTGGGTTTTCCAGATATTTTATTTGTTCACAGTAAATCATAAAATCTATACTTTACATATCAATACTGAAATAATAACATTTTTTTCTCTCAAGTCCACTGGTGGAT

Fln Alignment:

Contig686___FSQTILIFAALSGLLIIKAAAQSSLCRTNCGSLPIQYPFGIDDGCGSFEYRSLLVCTNNTKLELRTPTGRYLVKNISYANSHIIISDPSMWSCSAGDELPHSISFSLDISRKFSISNFNTFLYFNCNASSVLVKPQPSDCEDETSRCESVCDSNNYLCKSLPDCPKAL-------SKVS-CCSYYP---RTSDSLRLMLQNCESYTSIYWDIINASGNFSYNQIPAYGIRLNYE-NLSTNH----CLSCQYDGYGRGTCGYETEFGNFLCLCTDR-NVSTYCS
B8LQW8_____________FESLEVLLLSLCCLFLVPSAAGWA-CRDTCGNLQVKYPFGTGPGCGDPRFQNSVSCVNQ-KLMFTTHSGSYPISSIDYSQTTIYLADPQMSTCAA---MTSSGSFGLDAAAPFKFKN-DIFVLLNCSLSSCLYSPTNYLCDTGSSQ----------ICSSLYTCPGVLGLGLQQYSPISTCCVYAPINLGSAAEINLAKLQCQSYTSIYSFGDDATDPTRWN----YGIALKYSFNLDNSNFPTACVSCE---QSKGVCGFTGMYNSFTCVCRNGVNTTTNCN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
607		87		12	0.992554
628	87	12			0.992554
690		75	25		1.0
968	41	58			1.0
1096		12		87	0.992554
1198		10		90	0.90298
1326	10		90		0.90298
1327		10		90	0.90298
1328	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain