SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene653

Length: 3801 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene653
ATGGGATCCAGGGTGAAGGTAAGTTTTCTTGTACATTTGACTGTGTGGGGTAGAAGCACCCACTAAATCTAGAGGACCCAATTGGAATTTGGGGAGCTGGGCTTTCATTTTAGAGGCCAGAGGGGTTCTTCGCTGTTTATTTCTGCAATGCTGCCAATCCCTCCAGCTTGGAATCTGCTCAGATTGTCCTAAGCATTGTGCGCGACTGTTTCTTTTCTGGGTATCCAATGAGCGTTTCAATGGCATTCTGATCCTTTGCTGTGTTGAATAGATCCCACATTTTAGAGGAGCATCACTGGGTCAATAGAATTGTTGTGCTGGATTTTGCGCTGCACAGATGGATGGAGTAGTAGACATTCCTTCTGGTACCTTAATTAATGAAGAGGCTGCAGAGCAGGATGTAGACATAAATCAGAGTTTCCAGCAAACGAATGGCCATCATGAAAATGGTACTGTGTCTGATGATCCGTCCTCTCAGTTCTCTGCAGATTTAACGGAGTCTAGGAAAGAGAACAATGTGGAAGATGCAGACACAAACATGGGAAGCACAAAAATGGAATGGGCTTCAAGAACGTCCAACTCTAGCAGAGGAGATTGAATCTGAATTGCCAAGAAAAAGTGAAGGAGAAGTTGAAGTGACCTTAATAGCAAATGGGGGTTCGAACCAGACTGGGGATATGTCTGTTGAACAGGAGAAGCAGTCTAATTTAATTCTCGAAGGAGATGACGCATCAAAGCATCCTCAAACAGAAAACAATCCAATGGCTACGGAGGGGGTCAAAATGGTATCCAATCCACTTTCTACTCGGTTGAAATCAAAGAAGGTTAACTCCACTGTCCCAGAAAATGGTAGAACTACAGAATCTCAGAACCAGAGGTTAAGAAATTCTCAGAAATCAAGTACTTTCTTAAAGGGAAACCCAAAAGCTACAACCAGAAATAGTATAGATACAAATTCAAAATCTAAGAAAAATACGGTAGAGGTATCGGAAGCTGATAAATGCGAAACCATGTTGCCTGCTTCAAACAATCCCCTTCGTAGGTCAGTTAACCATGGATCTGCAAGATCAAATTACACTGTTCCACAGCCATTTGCTTTGGCAACTGACAAAAGGGCTTTTACTGGAGTTCGACCTGCTGATAATGAAATTGTTGAAGGGCAAAGATAAGCGTACCGTTGCAAATAGTATCACATCTTCCTCAGTTTCCAAAAAGACACAGTTGGTTGTGAGAACTGCTTCGACCCAAACACCCGGAAAATCTTTGCGTTCTGAGAGCTTGAAGGTGCATGAGCAAAGCATAAAGGTTCCCACACATGTAGATTCAAAGAATGATGAGGAGGAAGACAGCTGTTCTGTTGGCTCCTCAACTGCAACTCCAACCCAAGCTTTGAAGGACGGATCAGGCAATGGTGCCTCTGGCATTAGCTTCAGTTTTAGATGTGATGAGCGAGCAGAGAAACGGAAAGCGTTCTACTCAAAGCTAGAGGAAAAGATCCATGCAAAGGAGTTGGAAAAAAACCAATTGCAAGCCAAGTCCAAGGAAGAACAAGAGGCTGAGATCAGGCGGCTTAGGAAAAGTTTGACTTTTAAAGCCACACCCATGCCTGAATTTTACCAGGAAGCGACACCTCCAAAAGTTGAAATCAAGAAGATACCTCCCACCCGTGCAAAGTCGCCTAAGCTTGGACGTCGAAATAGTGGTAAAGAGGCTCGTTTTAGCCTTGAACAGAATAAATCCACTGGAGCCCTGCAAGAGCTCACTGAAGATGAGAATTCAGACAAGGGCTTTGGTAAAGACATTGCTTCTTCAAAGAGGGCTTTGAGAAGATCATTATCCAAGACACCTTATACAACAAAAACTCCAAAATCGAACTTTGATGAAATAAACCTAAAACAGCAGACTATAGATCAGCCAAAAGTTAAATCTGCTGTTGGGTCAACTGAAAATGGTAATCTCACTAAAACCAGGGTTCAGAATACTTTATCCAGTGTTTGCAATGAAGATAAAGTTAACTCGGAGGAGCTGGAGCCCATTAAAGAAAAAGTAAATGTTGAATCTTCACAATTGGATGATGAGATTGCCAAGATCATGGTCATTGATAATCAACCAAGTGAGCTTGATGAAGGAAGAGCAATTCTGCAGGAATATGAAGTAGTTGAAGAAAAAGATAGCACTGAACCTCTAAATGCACATAATGAGATAGTAGAAGTGGATGTTACTAATATAAGTCAACCGAGGGAATCTGATGAAGAGAGAATCGATGATCAGGGTGTGGAAGCAGTTAAAGGGATGAGCAGTGCTGAACCTTTAAATGGGCGTGATGAGATTGCAGAAGTCAAGATTAACAGTGATCAACTGATGGATTCTGATCCTCTTGTTCACACGGTTAAAGCTGTTGAAACTGGTTGTATGGAGCTAGCAGCAGATAAATTACGGGACTCACATGCCTCTAAATCCAAGAGCAATGTAAGCAAAGTGCCATTGCGTTCTAAGACTCAGAAGATAGAACAGATCCCATGTAATGGTGTAGATGCAAATGGAATAAAGATTAAATTGTCAAGGTCTAGTCAACAAGGTTCAACCCAGGAGTCCTTTGAATCAAGTGGGAAAGGCATACAGAAATCAGGACGAGAGCGATTCAAAGCAATGACACCCTCTTTGGCCAGTTCAAATAGGGAGAGTGTTAAATCCACGTCTTCTAAAAGAAGCAACAAGGGAAGCAATGACATGGCTCGAGTTGTTGGAGATGTTGCTGTACAGTCATAAATTCAAAAGTCTTTATCTCCTGGCTTTGATAAATAATTAGGGTGAAACATTCACTATTCGGGTGAAGGGGAGGCCGCTCTATGCATGTTTCTATTGTTCCGACTCTGCACATTCTGGAAATAGCTGTATTCATCAGCCTCACAATTGAAGGTACAACTGAGTCACTTCCAGATTACTCGCATGCGTTGACAAAGTGTTTGATTTCTGTGTTCATGAAAGTTTGTAGCTGTGTGCATTTTGATTAGAAGATGTGTGCCAAATAACTTGGGTTTATGTTGGACTGAGTGGCTAGTATGGTTGGGGAACTTGAACAATTGAGTTTGCAGTCTGCGGTATGAAAAAGTGGTGCTATCAATACTTATATCAATTCTTCATGATTTTTTCATTGATAAAATGTGTAGTAGTGAGTCTAGTGACAGTAGGCAGCTGTACCTAAAAGTGTGGGTTTAATTTTTTGATTACTACTGTGTACATGGTTGGAAAACCTGAAAGTATCAAAATTGTATTTTGCATGGACTGATCCAGTGTCTAGACTTGGAGGCATCTTTCACCTGTCATTTAAATAAGAACATAGTACTATGGTCGTCACTTTGTTATGATGTGAACTTAGATTTGCCCAGTACTGATGGTGGAAGTATTCTGGATATATGCTGTTACAAGCGATGCACATGCAGTAAAAATGCTTTTGCTTTCCTGGCTGTTAGTCTAATTATTGTCTTTCTTACTTGCTTATAGCTCAATGTCTGATATTTGATCATATGCGTAGCTTGTAGTTTGTTAGTGTATTGGTCATTTTAAGTTAGAATTTGTCTCTATACAAGAAGTCTTCTTTCTAAGTTTTAGGTAGGTTTGTTAGATCTAGTTGGATATGAGAGGTTCTCTCCAACTAGTTGGCTCCTATTTTGGTGTGTGGTTGAACTGTCAACAGTTCATTAGTGTGCTCAGAAAATGTCTCTATCACGAGGCATTGCTTGATGTATTTATATGTGGACAATTATTTGTTGAATAGATCATCATCACATTTGGTTTAGT

Ace file of the UniGene sp_v2.0_unigene653

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPX2 domain containing protein	-	-	3.0e-20	54%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	29%
Blast2go	tpx2 (targeting protein for xklp2)-like protein	-	-	1.82169e-44	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Xklp2 targeting protein	IPR009675	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7T7A2

Fln msg: Separated hits, possible frame ERROR between 1148 and 1165, your sequence is longer than subject: 752 - 450

Fln protein: MWKMQTQTWEAQKWNGLQERPTLAEEIESELPRKSEGEVEVTLIANGGSNQTGDMSVEQEKQSNLILEGDDASKHPQTENNPMATEGVKMVSNPLSTRLKSKKVNSTVPENGRTTESQNQRLRNSQKSSTFLKGNPKATTRNSIDTNSKSKKNTVEVSEADKCETMLPASNNPLRRSVNHGSARSNYTVPQPFALATDKRAFTGVRPADNxxxxxxxDKRTVANSITSSSVSKKTQLVVRTASTQTPGKSLRSESLKVHEQSIKVPTHVDSKNDEEEDSCSVGSSTATPTQALKDGSGNGASGISFSFRCDERAEKRKAFYSKLEEKIHAKELEKNQLQAKSKEEQEAEIRRLRKSLTFKATPMPEFYQEATPPKVEIKKIPPTRAKSPKLGRRNSGKEARFSLEQNKSTGALQELTEDENSDKGFGKDIASSKRALRRSLSKTPYTTKTPKSNFDEINLKQQTIDQPKVKSAVGSTENGNLTKTRVQNTLSSVCNEDKVNSEELEPIKEKVNVESSQLDDEIAKIMVIDNQPSELDEGRAILQEYEVVEEKDSTEPLNAHNEIVEVDVTNISQPRESDEERIDDQGVEAVKGMSSAEPLNGRDEIAEVKINSDQLMDSDPLVHTVKAVETGCMELAADKLRDSHASKSKSNVSKVPLRSKTQKIEQIPCNGVDANGIKIKLSRSSQQGSTQESFESSGKGIQKSGRERFKAMTPSLASSNRESVKSTSSKRSNKGSNDMARVVGDVAVQS*

Protein Length: 753

Fln nts: ATGGGATCCAGGGTGAAGGTAAGTTTTCTTGTACATTTGACTGTGTGGGGTAGAAGCACCCACTAAATCTAGAGGACCCAATTGGAATTTGGGGAGCTGGGCTTTCATTTTAGAGGCCAGAGGGGTTCTTCGCTGTTTATTTCTGCAATGCTGCCAATCCCTCCAGCTTGGAATCTGCTCAGATTGTCCTAAGCATTGTGCGCGACTGTTTCTTTTCTGGGTATCCAATGAGCGTTTCAATGGCATTCTGATCCTTTGCTGTGTTGAATAGATCCCACATTTTAGAGGAGCATCACTGGGTCAATAGAATTGTTGTGCTGGATTTTGCGCTGCACAGATGGATGGAGTAGTAGACATTCCTTCTGGTACCTTAATTAATGAAGAGGCTGCAGAGCAGGATGTAGACATAAATCAGAGTTTCCAGCAAACGAATGGCCATCATGAAAATGGTACTGTGTCTGATGATCCGTCCTCTCAGTTCTCTGCAGATTTAACGGAGTCTAGGAAAGAGAACA_-_ATGTGGAAGATGCAGACACAAACATGGGAAGCACAAAAATGGAATGGGCTTCAAGAACGTCCAACTCTAGCAGAGGAGATTGAATCTGAATTGCCAAGAAAAAGTGAAGGAGAAGTTGAAGTGACCTTAATAGCAAATGGGGGTTCGAACCAGACTGGGGATATGTCTGTTGAACAGGAGAAGCAGTCTAATTTAATTCTCGAAGGAGATGACGCATCAAAGCATCCTCAAACAGAAAACAATCCAATGGCTACGGAGGGGGTCAAAATGGTATCCAATCCACTTTCTACTCGGTTGAAATCAAAGAAGGTTAACTCCACTGTCCCAGAAAATGGTAGAACTACAGAATCTCAGAACCAGAGGTTAAGAAATTCTCAGAAATCAAGTACTTTCTTAAAGGGAAACCCAAAAGCTACAACCAGAAATAGTATAGATACAAATTCAAAATCTAAGAAAAATACGGTAGAGGTATCGGAAGCTGATAAATGCGAAACCATGTTGCCTGCTTCAAACAATCCCCTTCGTAGGTCAGTTAACCATGGATCTGCAAGATCAAATTACACTGTTCCACAGCCATTTGCTTTGGCAACTGACAAAAGGGCTTTTACTGGAGTTCGACCTGCTGATAATGAxxxxxxxxxxxxxxxxxxAGATAAGCGTACCGTTGCAAATAGTATCACATCTTCCTCAGTTTCCAAAAAGACACAGTTGGTTGTGAGAACTGCTTCGACCCAAACACCCGGAAAATCTTTGCGTTCTGAGAGCTTGAAGGTGCATGAGCAAAGCATAAAGGTTCCCACACATGTAGATTCAAAGAATGATGAGGAGGAAGACAGCTGTTCTGTTGGCTCCTCAACTGCAACTCCAACCCAAGCTTTGAAGGACGGATCAGGCAATGGTGCCTCTGGCATTAGCTTCAGTTTTAGATGTGATGAGCGAGCAGAGAAACGGAAAGCGTTCTACTCAAAGCTAGAGGAAAAGATCCATGCAAAGGAGTTGGAAAAAAACCAATTGCAAGCCAAGTCCAAGGAAGAACAAGAGGCTGAGATCAGGCGGCTTAGGAAAAGTTTGACTTTTAAAGCCACACCCATGCCTGAATTTTACCAGGAAGCGACACCTCCAAAAGTTGAAATCAAGAAGATACCTCCCACCCGTGCAAAGTCGCCTAAGCTTGGACGTCGAAATAGTGGTAAAGAGGCTCGTTTTAGCCTTGAACAGAATAAATCCACTGGAGCCCTGCAAGAGCTCACTGAAGATGAGAATTCAGACAAGGGCTTTGGTAAAGACATTGCTTCTTCAAAGAGGGCTTTGAGAAGATCATTATCCAAGACACCTTATACAACAAAAACTCCAAAATCGAACTTTGATGAAATAAACCTAAAACAGCAGACTATAGATCAGCCAAAAGTTAAATCTGCTGTTGGGTCAACTGAAAATGGTAATCTCACTAAAACCAGGGTTCAGAATACTTTATCCAGTGTTTGCAATGAAGATAAAGTTAACTCGGAGGAGCTGGAGCCCATTAAAGAAAAAGTAAATGTTGAATCTTCACAATTGGATGATGAGATTGCCAAGATCATGGTCATTGATAATCAACCAAGTGAGCTTGATGAAGGAAGAGCAATTCTGCAGGAATATGAAGTAGTTGAAGAAAAAGATAGCACTGAACCTCTAAATGCACATAATGAGATAGTAGAAGTGGATGTTACTAATATAAGTCAACCGAGGGAATCTGATGAAGAGAGAATCGATGATCAGGGTGTGGAAGCAGTTAAAGGGATGAGCAGTGCTGAACCTTTAAATGGGCGTGATGAGATTGCAGAAGTCAAGATTAACAGTGATCAACTGATGGATTCTGATCCTCTTGTTCACACGGTTAAAGCTGTTGAAACTGGTTGTATGGAGCTAGCAGCAGATAAATTACGGGACTCACATGCCTCTAAATCCAAGAGCAATGTAAGCAAAGTGCCATTGCGTTCTAAGACTCAGAAGATAGAACAGATCCCATGTAATGGTGTAGATGCAAATGGAATAAAGATTAAATTGTCAAGGTCTAGTCAACAAGGTTCAACCCAGGAGTCCTTTGAATCAAGTGGGAAAGGCATACAGAAATCAGGACGAGAGCGATTCAAAGCAATGACACCCTCTTTGGCCAGTTCAAATAGGGAGAGTGTTAAATCCACGTCTTCTAAAAGAAGCAACAAGGGAAGCAATGACATGGCTCGAGTTGTTGGAGATGTTGCTGTACAGTCATAA___ATTCAAAAGTCTTTATCTCCTGGCTTTGATAAATAATTAGGGTGAAACATTCACTATTCGGGTGAAGGGGAGGCCGCTCTATGCATGTTTCTATTGTTCCGACTCTGCACATTCTGGAAATAGCTGTATTCATCAGCCTCACAATTGAAGGTACAACTGAGTCACTTCCAGATTACTCGCATGCGTTGACAAAGTGTTTGATTTCTGTGTTCATGAAAGTTTGTAGCTGTGTGCATTTTGATTAGAAGATGTGTGCCAAATAACTTGGGTTTATGTTGGACTGAGTGGCTAGTATGGTTGGGGAACTTGAACAATTGAGTTTGCAGTCTGCGGTATGAAAAAGTGGTGCTATCAATACTTATATCAATTCTTCATGATTTTTTCATTGATAAAATGTGTAGTAGTGAGTCTAGTGACAGTAGGCAGCTGTACCTAAAAGTGTGGGTTTAATTTTTTGATTACTACTGTGTACATGGTTGGAAAACCTGAAAGTATCAAAATTGTATTTTGCATGGACTGATCCAGTGTCTAGACTTGGAGGCATCTTTCACCTGTCATTTAAATAAGAACATAGTACTATGGTCGTCACTTTGTTATGATGTGAACTTAGATTTGCCCAGTACTGATGGTGGAAGTATTCTGGATATATGCTGTTACAAGCGATGCACATGCAGTAAAAATGCTTTTGCTTTCCTGGCTGTTAGTCTAATTATTGTCTTTCTTACTTGCTTATAGCTCAATGTCTGATATTTGATCATATGCGTAGCTTGTAGTTTGTTAGTGTATTGGTCATTTTAAGTTAGAATTTGTCTCTATACAAGAAGTCTTCTTTCTAAGTTTTAGGTAGGTTTGTTAGATCTAGTTGGATATGAGAGGTTCTCTCCAACTAGTTGGCTCCTATTTTGGTGTGTGGTTGAACTGTCAACAGTTCATTAGTGTGCTCAGAAAATGTCTCTATCACGAGGCATTGCTTGATGTATTTATATGTGGACAATTATTTGTTGAATAGATCATCATCACATTTGGTTTAGT

Fln Alignment:

Contig653___MQTQTWEAQKWNGLQERPTLAEEIESELPRKSEGEVEVTLIANGGSNQTGDMSVEQEKQSNLILEGDDA--SKHPQTENNPMATEGVKMVSNPLSTRLKSKKVNSTVPENGR-TTES--------QNQRLRNSQK-SSTFLKGNPKATTRNSIDTNSKSKKNTVEVSEADKCETMLPASNNPLRRSVNHGSARSNYTVPQPFALATDKRAFTGVRPADNExxxxxxDKRTVANSITSSSVSKKTQLVVRTASTQTPGKSLRSESLKVHEQSIKVPTHVDSKNDEEEDSCSVGSSTATPTQALKDGSGNGASGISFSFRCDERAEKRKAFYSKLEEKIHAKELEKNQLQAKSKEEQEAEIRRLRKSLTFKATPMPEFYQEATPPKVEIKKIPPTRAKSPKLGRRNSGKEA
D7T7A2_____________MRTQDKDQQTKAGDLE-PSHAISLQTHLSDTSNP----TLLPTMGMEVT-DICMDNEPNCVMIYSNGVSCDSSHETAPIHHDFAESYKHINGDPEPQILEEKVEGKEYEVKECTTESSVEISQLCQVEKCEEQEKPSSNFEADLPEEKVKSEVPKSKDDKKLKSSVKPASK-----PAV----------GSARTNYTVPQPFALATEKRASCGTRPFGTExxxxxxDVGTVANK---SSITKNLQ-------TPTATKHNQQTSLLVPRKPLEPD---NKKHPDEEDSCSVTSSTAPSARTVKSRAIVASAPV---FRCTARAEKRKEFYSKLEEKHQALEAEKNQCEARTKEEREAAIKQLRKSLMFKASPMPSFYHEGPPPKAELKKLPPTRAKSPKLGRRKSCSDA

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1385	87			12	0.992554
1820	16			83	0.999991
1861	28	71			1.0
1929	14		85		0.993533
1932	14		85		0.993533
2127	33		66		0.997452
2386		83		16	0.994512
2387			83	16	0.994512
2408	14			85	0.993533
2412	83		16		0.994512
2413			16	83	0.994512
2453		10		90	0.90298
2509	88		11		0.923564
2510	88		11		0.923564
2974			4	88	0.999262
3335		10	90		0.90298
3337	90			10	0.90298
3338		90		10	0.90298
3370		20		80	0.995493
3410	33		66		0.997452
3464		20	80		0.995493
3530	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain