SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92212

Length: 561 nt

UniGene Fasta

>sp_v2.0_unigene92212
ATTGAATATCTCCATAGTGGCTGCAATCCAAGCATAATTCATAGGGATATAAAGACCAGCAATATTCTTCTTGATATCCATATGAGGGCAAAGGTGTCAGACTTTGGGTTGTCCAGGTCAGCTGATGAAGAAAGGACTCATGTCTCAAGTGTTGTCCGTGGAACTGTGGGCTATCTTGATCCTGAGTATCATGCAACTCAACAGCTGACGGAAAAGAGTGATGTTTATAGTTTTGGAGTTGTCCTCCTGGAAATGATATCTGGTCGAGAAGCTATCTCTGATGAAGGTTTTGGTGTTAATTTCCGGAACATCGTGCAATGGGCAAGATTCCATATTGATAAAGGCGATATTCACAGTATCATAGATCCAGCTTTGGGAACTAATTTCAATATCCAGTCCGTGTGGAAAATTGCGGAGAAAGCTATGCTTTGTGTCCAACCATATGGAAAACTGCGACCAACAATGTCAGATGTGGTAAAGGAGATTCAAGAGGCAATCAACATTGAGAATGAATATGAATCCGCGGACGAAGAACTTTTTGAGACGATGTCAAGTCAGTCA

Ace file of the UniGene sp_v2.0_unigene92212

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative receptor protein kinase [Arabidopsis thaliana] gb\|ACN59306.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AEC09344.1\| putative receptor protein kinase [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at1g67720-like	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: Distance to subject end: 42 aas, your sequence is shorter than subject: 187 - 431

Fln protein: IEYLHSGCNPSIIHRDIKTSNILLDIHMRAKVSDFGLSRSADEERTHVSSVVRGTVGYLDPEYHATQQLTEKSDVYSFGVVLLEMISGREAISDEGFGVNFRNIVQWARFHIDKGDIHSIIDPALGTNFNIQSVWKIAEKAMLCVQPYGKLRPTMSDVVKEIQEAINIENEYESADEELFETMSSQS

Protein Length: 188

Fln nts: ATTGAATATCTCCATAGTGGCTGCAATCCAAGCATAATTCATAGGGATATAAAGACCAGCAATATTCTTCTTGATATCCATATGAGGGCAAAGGTGTCAGACTTTGGGTTGTCCAGGTCAGCTGATGAAGAAAGGACTCATGTCTCAAGTGTTGTCCGTGGAACTGTGGGCTATCTTGATCCTGAGTATCATGCAACTCAACAGCTGACGGAAAAGAGTGATGTTTATAGTTTTGGAGTTGTCCTCCTGGAAATGATATCTGGTCGAGAAGCTATCTCTGATGAAGGTTTTGGTGTTAATTTCCGGAACATCGTGCAATGGGCAAGATTCCATATTGATAAAGGCGATATTCACAGTATCATAGATCCAGCTTTGGGAACTAATTTCAATATCCAGTCCGTGTGGAAAATTGCGGAGAAAGCTATGCTTTGTGTCCAACCATATGGAAAACTGCGACCAACAATGTCAGATGTGGTAAAGGAGATTCAAGAGGCAATCAACATTGAGAATGAATATGAATCCGCGGACGAAGAACTTTTTGAGACGATGTCAAGTCAGTCA

Fln Alignment:

uma_euler_29327___IEYLHSGCNPSIIHRDIKTSNILLDIHMRAKVSDFGLSRSADE-ERTHVSSVVRGTVGYLDPEYHATQQLTEKSDVYSFGVVLLEMISGREAISDEGFGVNFRNIVQWAR-FHIDKGDIHSIIDPALGTNFNIQSVWKIAEKAMLCVQPYGKLRPTMSDVVKEIQEAINIENEYESA
B8LKY1_______________LEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSI-DKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLLSLKDTASSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain