SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92179

Length: 517 nt

UniGene Fasta

>sp_v2.0_unigene92179
AACAGCCAAGGCAATCGATTCCTCGCACCCGACTATCGCTCTTCCAAGGAGGTAACGAAGCGCGAGTACACAGCGGAGAGTGTATGGAAGCAGTGGAATTGGAGGTCAGACGGAGACTTGATGTTGAACGGGGCGTTCTTTGTTCCGTCGGGGGCGGGCGCATCGTCGAGCTATACGAAGGCTTCTAGTCTCTCAGCGAGGCCTTCCTCTCTCGTCGCCTCCCTCACAGGGAACGCCGGCGTTCTGACATGCAAGAAAGGCTCTGCATGCTGATTCCATAAACACAGTGCAGACGGCCACCTTAAATTTCCCTGCCTCTCTGAATTAGCTGGACTCCTTCTTTGTGTTATAACAGCAGTCCTGATGTGTAACAGTATGTTAGGTCAATTGATGTGACGAAGCTCATCTAACTTCCAGCCTGGGACTCCATGAATGGCCCCCCTTCTCCTCTTGATGGAGGCTAACGGGCCAGTGAAGACGGCCTGTAAAATTGTCGTTTGCCTTAACAATTTGTAGT

Ace file of the UniGene sp_v2.0_unigene92179

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pectate lyase [Gossypium hirsutum]	-	-	2.0e-23	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	pectate lyase	-	-	3.52735e-28	82%

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectate lyase, N-terminal	IPR007524	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWK6

Fln msg: your sequence is shorter than subject: 91 - 436

Fln protein: NSQGNRFLAPDYRSSKEVTKREYTAESVWKQWNWRSDGDLMLNGAFFVPSGAGASSSYTKASSLSARPSSLVASLTGNAGVLTCKKGSAC*

Protein Length: 92

Fln nts: AACAGCCAAGGCAATCGATTCCTCGCACCCGACTATCGCTCTTCCAAGGAGGTAACGAAGCGCGAGTACACAGCGGAGAGTGTATGGAAGCAGTGGAATTGGAGGTCAGACGGAGACTTGATGTTGAACGGGGCGTTCTTTGTTCCGTCGGGGGCGGGCGCATCGTCGAGCTATACGAAGGCTTCTAGTCTCTCAGCGAGGCCTTCCTCTCTCGTCGCCTCCCTCACAGGGAACGCCGGCGTTCTGACATGCAAGAAAGGCTCTGCATGCTGA___TTCCATAAACACAGTGCAGACGGCCACCTTAAATTTCCCTGCCTCTCTGAATTAGCTGGACTCCTTCTTTGTGTTATAACAGCAGTCCTGATGTGTAACAGTATGTTAGGTCAATTGATGTGACGAAGCTCATCTAACTTCCAGCCTGGGACTCCATGAATGGCCCCCCTTCTCCTCTTGATGGAGGCTAACGGGCCAGTGAAGACGGCCTGTAAAATTGTCGTTTGCCTTAACAATTTGTAGT

Fln Alignment:

uma_euler_28376___NSQGNRFLAPDYRSSKEVTKREYTAESVWKQWNWRSDGDLMLNGAFFVPXXXXXXXXXXXXXXXXXRPSSLVASLTGNAGVLTCKKGSAC
A9NWK6_______________NSQGNRFLAPTNPFSKEVTKHEDAPESKWRQWNWRSDGDQMLNGAFFTPSGAGASSSYSKASSLAARPSSLVPSLTTNAGVLTCRSGSRC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain