SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92129

Length: 523 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene92129
TCACTATACCCAGGATGCATTGCTACTACAGGACTGTTCCGCGAGCATGTTCCTCTGTTCAGGCTTCTTTTTCCACCTTTCCAAAAATACATTACTAAAGGATTCGTTTCTGAGGAGGAAGCAGGAAAAAGGCTTGCACAGGTTGTGAGTAATCCAAGTTTGACCAAGTCCGGTGTATATTGGAGCTGGAATAACAACTCGGCTTCCTTTGAGAATCAGTTATCTGAAGAAGCCAGTGATCCCGAGAAAGCTAAAAAATTATGGGAAATTAGTGAAAAGCTTGTTGGACTTGCTTGAAGTTCTCCTATATTGTCAAGATTATGTGTACATTAGGTAGGTCAAGATGCCAAATATTGGTGTGTTTTGTAGGGTGGAGGATTTATCAGAAGAGAAACAGATATAAATTACTCTGGACTTTTGTGCATGTTTTCATTGCAGCGCTTACTTCGGTAGTGAGTGGTCATTGAAAATTTTTCTTTGATTGTGTAATCGAGGTTAAATTGGTCGCAGTTTATATTCTTTT

Ace file of the UniGene sp_v2.0_unigene92129 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADPH-protochlorophyllide-oxidoreductase n=6 Tax=Pinaceae RepID=Q41202_PINMU	-	-	97%
FL-Next	tr=NADPH-protochlorophyllide-oxidoreductase; Pinus mugo (Dwarf mountain pine).	-	-	97%
Blast2go	protochlorophyllide reductase b	-	-	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	97%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	97%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Light-dependent protochlorophyllide reductase	IPR005979	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q41202

Fln msg: your sequence is shorter than subject: 99 - 400

Fln protein: SLYPGCIATTGLFREHVPLFRLLFPPFQKYITKGFVSEEEAGKRLAQVVSNPSLTKSGVYWSWNNNSASFENQLSEEASDPEKAKKLWEISEKLVGLA*

Protein Length: 100

Fln nts: TCACTATACCCAGGATGCATTGCTACTACAGGACTGTTCCGCGAGCATGTTCCTCTGTTCAGGCTTCTTTTTCCACCTTTCCAAAAATACATTACTAAAGGATTCGTTTCTGAGGAGGAAGCAGGAAAAAGGCTTGCACAGGTTGTGAGTAATCCAAGTTTGACCAAGTCCGGTGTATATTGGAGCTGGAATAACAACTCGGCTTCCTTTGAGAATCAGTTATCTGAAGAAGCCAGTGATCCCGAGAAAGCTAAAAAATTATGGGAAATTAGTGAAAAGCTTGTTGGACTTGCTTGA___AGTTCTCCTATATTGTCAAGATTATGTGTACATTAGGTAGGTCAAGATGCCAAATATTGGTGTGTTTTGTAGGGTGGAGGATTTATCAGAAGAGAAACAGATATAAATTACTCTGGACTTTTGTGCATGTTTTCATTGCAGCGCTTACTTCGGTAGTGAGTGGTCATTGAAAATTTTTCTTTGATTGTGTAATCGAGGTTAAATTGGTCGCAGTTTATATTCTTTT

Fln Alignment:

uma_euler_26417___SLYPGCIATTGLFREHVPLFRLLFPPFQKYITKGFVSEEEAGKRLAQVVSNPSLTKSGVYWSWNNNSASFENQLSEEASDPEKAKKLWEISEKLVGLA
Q41202_______________SLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEEEAGKRLAQVVSNPSLTKSGVYWSWNNNSGSFENQLSEEASDPEKAKKLWEISEKLVGLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain