SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92055

Length: 335 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene92055
TGGGTGCCCGTGACGAAGCTTGGCCGCTTAGTAAAAGAAGGGAAAATCCGTTCCCTCGAGCAAATCTATCTTTTCTCGTTGGCGGAGGCCATGCTGGGTCCTCAGCTGAAGGATGAGGTTATGAAATTCAAAGCATTCGTTGTTGTGGGTGACGGCAATGGTCACAGCAAGGAGGTGGCCACGGCCATCCGCGGAGCCATTATTTTGGCGAAGCTTTCGGTTATTCCCGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCCACAGGGAAGTGCGGCTCTGTTACCGTCAGAATGGTGCCAGCGCCTAGAGGTGCCGGGATAGTGGCCGC

Ace file of the UniGene sp_v2.0_unigene92055 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S2, putative n=2 Tax=Ricinus communis RepID=B9RIB2_RICCO	-	-	6.02558e-44	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	protein	-	-	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S5	IPR000851	-	-
Sma3	Ribosomal protein S5, C-terminal	IPR005324	-	-
Sma3	Ribosomal protein S5, eukaryotic/archaeal	IPR005711	-	-
Sma3	Ribosomal protein S5, N-terminal	IPR013810	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Ribosomal protein S5, N-terminal, conserved site	IPR018192	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMF2

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 111 - 270

Fln protein: WVPVTKLGRLVKEGKIRSLEQIYLFSLAEAMLGPQLKDEVMKFKAFVVVGDGNGHSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPTGKCGSVTVRMVPAPRGAGIVA

Protein Length: 112

Fln nts: TGGGTGCCCGTGACGAAGCTTGGCCGCTTAGTAAAAGAAGGGAAAATCCGTTCCCTCGAGCAAATCTATCTTTTCTCGTTGGCGGAGGCCATGCTGGGTCCTCAGCTGAAGGATGAGGTTATGAAATTCAAAGCATTCGTTGTTGTGGGTGACGGCAATGGTCACAGCAAGGAGGTGGCCACGGCCATCCGCGGAGCCATTATTTTGGCGAAGCTTTCGGTTATTCCCGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCCACAGGGAAGTGCGGCTCTGTTACCGTCAGAATGGTGCCAGCGCCTAGAGGTGCCGGGATAGTGGCCGC

Fln Alignment:

uma_euler_24060___WVPVTKLGRLVKEGKIRSLEQIYLFSLA-------EAMLGPQLKDEVMK---------------FKAFVVVGDGNGH-------SKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKP-------TGKCGSVTVRMVPAPRGAGIVA
A9NMF2_______________WVPVTKLGRLVKEGKIRSLEQIYLFSLAVKEHQIVEAMLGPQLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPVKVTGKCGSVTVRMVPAPRGAGIVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain