SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91973

Length: 549 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene91973
CAAAAGTGAGAATTTATGGACACATTAATCTACAATTTCTCCACCGATTATTACTTTCAACTTGCAGAATCATTTAGCACTGACTCGCTTGAATTTTCTCAAGAAAGGAATGACCAAAGAGCCCACCTCCTCTTCTCGTCTCTGTTCAGAACCCTAATTTCTGCTATAAATACTCCATACCAATCTCAAATAAATCATCAGGCAAGGGATTCGTCAATCATGGATGCCCAGCAGCAGGTCACGGGTTCGAGAGTTCTGGTAGTCGATTCTGACAAATCATGGGATATCATTCTGGGTCGAGCCAAAGTCCAAGCCTGCCCGATTGTAGTGCATTTTACTGCAGACTGGTGCGCTCCTTCAAAATACATGGCGGGGTTCTTCGGGAATCTGGCGTTGAAGTATCGGGACATCCTGTTTCTATTAGTTGATGTGGATGAAGTTAAAGGAGTTAAAGATAAAATGGATGTGAAGGCCATGCCCACCTTCTTACTAATGAAAGACGGTGTGCAGGAGGACAAACTAGTGGGAGCCAACGCCGATGAGCTGCAG

Ace file of the UniGene sp_v2.0_unigene91973 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin-like protein (Fragment) n=7 Tax=Pseudotsuga RepID=C6FC02_PSEMZ	-	-	1.0e-27	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	thioredoxin-like protein	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein disulfide-isomerase.	EC:5.3.4.1	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein thiol-disulfide exchange	GO:0006467	Biological Process	81%
Blast2go	protein deglutathionylation	GO:0080058	Biological Process	81%
Blast2go	protein disulfide isomerase activity	GO:0003756	Molecular Function	81%
Blast2go	cytosol	GO:0005829	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3		IPR017936	-	-
Sma3		IPR015467	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNP2

Fln msg: Distance to subject end: 18 aas, your sequence is longer than subject: 178 - 128

Fln protein: MDTLIYNFSTDYYFQLAESFSTDSLEFSQERNDQRAHLLFSSLFRTLISAINTPYQSQINHQARDSSIMDAQQQVTGSRVLVVDSDKSWDIILGRAKVQACPIVVHFTADWCAPSKYMAGFFGNLALKYRDILFLLVDVDEVKGVKDKMDVKAMPTFLLMKDGVQEDKLVGANADELQ

Protein Length: 179

Fln nts: CAAAAGTGAGAATTT_-_ATGGACACATTAATCTACAATTTCTCCACCGATTATTACTTTCAACTTGCAGAATCATTTAGCACTGACTCGCTTGAATTTTCTCAAGAAAGGAATGACCAAAGAGCCCACCTCCTCTTCTCGTCTCTGTTCAGAACCCTAATTTCTGCTATAAATACTCCATACCAATCTCAAATAAATCATCAGGCAAGGGATTCGTCAATCATGGATGCCCAGCAGCAGGTCACGGGTTCGAGAGTTCTGGTAGTCGATTCTGACAAATCATGGGATATCATTCTGGGTCGAGCCAAAGTCCAAGCCTGCCCGATTGTAGTGCATTTTACTGCAGACTGGTGCGCTCCTTCAAAATACATGGCGGGGTTCTTCGGGAATCTGGCGTTGAAGTATCGGGACATCCTGTTTCTATTAGTTGATGTGGATGAAGTTAAAGGAGTTAAAGATAAAATGGATGTGAAGGCCATGCCCACCTTCTTACTAATGAAAGACGGTGTGCAGGAGGACAAACTAGTGGGAGCCAACGCCGATGAGCTGCAG

Fln Alignment:

uma_euler_21766___MDAQQQVTGSRVLVVDSDKSWDIILGRAKVQACPIVVHFTADWCAPSKYMAGFFGNLALKYRDILFLLXXXXXXXXXXXXXXXKAMPTFLLMKDGVQEDKLVGANADELQ
A9NNP2_______________MEAHQQVTGSRVLVVDSDKSWDIILGQAQLQACPVAVHFTADWCAPSKYMAGFFENLALKYPHILFLLVDVDEVKGVKDKMDVKAMPTFLLMKDNVQVDKIVGANADELQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain