SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91868

Length: 519 nt

UniGene Fasta

>sp_v2.0_unigene91868
GCTAATAGCAGCCCTGTTTATGTGCTACACTTAACTAACGCGGGAGAATTTCTTGCAAATGATACTACAAACCAGACTTTCTGTATAGCAAAGCCCGGGGCTGATCTGAAGCTTCTACAGGCTGCACTGGACTGGGCTTGTGGACCAGGGGAAGCAAACTGTACTGCAATTCAAGGGGGTGAAGACTGTTTTAATCCTGATACTGTTGAAGCTCATTCCTCATATGCATTTGATAGTTATTATCACAACACCGGAATGGCAGCTGGGTCCTGTGACTTCAAGGGTGTTGCTATCATAACGACAACTGATCCTAGTCATGGATCATGTGTTTACTGGTATAGTAGGACGCTTGGGAGTTCCTGTAATATTGAGTACGTGAATCACTAGATTGCTGTTGTAAGTGTCAGCATTGTTTATGGTGGCATAAGGTTCAGTGGCATCACCATCTGAGGGCCATCCTGTCTCAGCTACCACCACAGGAATGTTTGTGTAGTTGAGATTACCCATGGAATAGTATGC

Ace file of the UniGene sp_v2.0_unigene91868

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Glucan endo-1,3-beta-glucosidase 1; AltName: Full=(1->3)-beta-glucan endohydrolase 1; Short=(1->3)-beta-glucanase 1; AltName: Full=Beta-1,3-endoglucanase 1; Short=Beta-1,3-glucanase 1; Flags: Precursor	-	-	8.00141e-43	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	glucan endo- -beta-glucosidase	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZF3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 38 aas, putative chimeric sequence, your sequence is shorter than subject: 129 - 212

Fln protein: ANSSPVYVLHLTNAGEFLANDTTNQTFCIAKPGADLKLLQAALDWACGPGEANCTAIQGGEDCFNPDTVEAHSSYAFDSYYHNTGMAAGSCDFKGVAIITTTDPSHGSCVYWYSRTLGSSCNIEYVNH*

Protein Length: 130

Fln nts: GCTAATAGCAGCCCTGTTTATGTGCTACACTTAACTAACGCGGGAGAATTTCTTGCAAATGATACTACAAACCAGACTTTCTGTATAGCAAAGCCCGGGGCTGATCTGAAGCTTCTACAGGCTGCACTGGACTGGGCTTGTGGACCAGGGGAAGCAAACTGTACTGCAATTCAAGGGGGTGAAGACTGTTTTAATCCTGATACTGTTGAAGCTCATTCCTCATATGCATTTGATAGTTATTATCACAACACCGGAATGGCAGCTGGGTCCTGTGACTTCAAGGGTGTTGCTATCATAACGACAACTGATCCTAGTCATGGATCATGTGTTTACTGGTATAGTAGGACGCTTGGGAGTTCCTGTAATATTGAGTACGTGAATCACTAG___ATTGCTGTTGTAAGTGTCAGCATTGTTTATGGTGGCATAAGGTTCAGTGGCATCACCATCTGAGGGCCATCCTGTCTCAGCTACCACCACAGGAATGTTTGTGTAGTTGAGATTACCCATGGAATAGTATGC

Fln Alignment:

uma_euler_18316___AGEFLANDTTNQT----------FCIAKPGADLKLLQAALDWACGPGEANCTAIQGGEDCFNPDTVEAHSSYAFDSYYHNTGMAAGSCDFKGVAIITTTDPSHGSCVY
A9NZF3_______________ASFFLGNDSSTPTPSTPTSAGTTWCVAKNNVGDSTLQVALDYACGLGGADCTAIQQGGVCFDPDNVQAHASYAFNSYYVKNGMLPGTCDFAGSAAPTTNNPSFGKCMF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain