SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91811

Length: 1125 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene91811 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	uncharacterized protein	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	69%
Blast2go	chloroplast	GO:0009507	Cellular Component	69%
Blast2go	membrane	GO:0016020	Cellular Component	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUY1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 306 - 326

Fln protein: *VMTRGRVV*RLEHPPSVSINLLPIHAGDFNLWSFVINFGAGPIAYCDVAIGRDDIRYSSDDAYRDPTYGYASSVKTYNIELKPLFSAFSPKTLGMTTLRALVMFYLPLLEPQLEEEHDDDDNFEDEQERQPVDLVIPLKKSVKQIFRETAMLTTRRVLERLAVHYVSQRMAWKLLKDLSKSAERKACRHLSRFNFFVCVSRTTFRGHFLGVAASWVVQVGIEVYHYVSDIWKQENQNDRSNQVQVLRKRVLNTTVRCGFSLVFASIGAGLGAMLLRPSSGQWLGCAVGDMAGPFVAGFLIRSWD*

Protein Length: 307

Fln nts: GTAAGTTATGACCAGAGGTCGAGTTGTCTGACGTCTTGAGCATCCACCGTCGGTGTCAATAAATCTGCTGCCTATACATGCTGGTGATTTCAATTTGTGGTCATTCGTCATCAATTTTGGTGCAGGTCCAATTGCTTATTGTGATGTTGCTATAGGCCGTGATGATATTCGATATAGCTCTGACGATGCTTATAGGGATCCCACTTATGGTTATGCTTCTAGTGTCAAAACTTATAATATTGAATTGAAGCCACTTTTCTCTGCCTTTAGCCCGAAGACACTTGGAATGACAACGTTAAGAGCTCTTGTTATGTTTTACCTGCCTCTTTTGGAACCCCAGCTGGAGGAAGAACATGATGATGATGATAATTTTGAAGATGAACAAGAAAGGCAGCCCGTGGATCTTGTTATTCCTTTGAAGAAATCCGTGAAGCAAATTTTCCGGGAGACTGCTATGCTTACAACAAGGCGGGTGCTTGAAAGACTTGCTGTGCACTATGTTTCTCAGCGAATGGCATGGAAGCTTCTGAAAGATCTTTCAAAATCAGCTGAGCGTAAAGCATGCAGACATTTGTCAAGATTTAACTTCTTTGTATGTGTCAGCCGAACAACTTTTAGAGGACATTTCCTAGGGGTTGCAGCATCATGGGTTGTTCAGGTGGGTATAGAAGTTTATCACTATGTTTCTGATATCTGGAAGCAAGAGAATCAGAATGATAGATCTAATCAAGTTCAAGTGCTCAGAAAAAGAGTGCTGAACACTACAGTTAGATGTGGATTTTCGTTGGTATTTGCATCTATTGGAGCTGGTCTTGGGGCAATGCTTCTGCGTCCATCATCTGGACAATGGCTTGGTTGTGCAGTTGGAGATATGGCTGGCCCATTTGTTGCTGGATTCTTGATACGGAGCTGGGACTAG___TTCAATCTCTTTGTCTCAACTTCCCCATGCATTGCTGGTTTAGACCATATTGCCTCTGTCCCAGTTTGATACGAAATTTAACCACTAAATTTTGTTAGTTGACAGCAATCAAAGAAAGTTCTTCGAGGTACAAGCCTACGAGGCTCATTACCTGTTTTAATGGATGGAATTCCTGCTTGCTTATTATTCACCCTTCTCTTTTTGTG

Fln Alignment:

uma_euler_17048___NLWSFVINF---GAGPIAYCDVAIGRDDIRYSSDDAYRDPTYGYASSVKTYNIELKPLFSAFSPKTLGMTTLRALVMFYXXXXXXXXXXXXXXXXXXXXXXE-RQPVDLVIPLKKSVKQIFRETAMLTTRRVLERLAVHYVSQRMAWKLLKDLSKSAERKACRHLSRFNFFVCVSRTTFRGHFLGVAASWVVQVGIEVYHYVSDIWKQENQNDRSNQVQVLRKRVLNTTVRCGFSLVFASIGAGLGAMLLRPSSGQWLGCAVGDMAGPFVAGFLIRSWD
A9NUY1_______________NYSSFASQFLLSGAGSIAYCDAAVGLDDIRYSSDNAYRDPTYDYASSVKTYNIELKPLFSAFSPKTLGMTTLRALVMFYLPLLEPHLEEEHDDDDNFEDEQQERQPVDLVIPLKKSVKQIFRETTMLTTRRVLERLAVHYVSQRMAWKLLKDLSKSAERKACRHLSRFNFFLCVSRTTFRGHFLGVAASWVVQVGIEVYHYVSDIWKHENQSDRSNQVQVLRRRALNTTVRCGFSLVFASIGAGLGAMLMRPSSGQWLGCAVGDIAGPFIAGFLIRSWD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain